Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_031094.1 Length=33105 Score E Sequences producing significant alignments: (Bits) Value seq729 111 3e-20 >seq729 Length=25020 Score = 111 bits (122), Expect = 3e-20 Identities = 166/236 (70%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 27461 GCGGTTAACCGTAACTTTAAGGATGCTAATGGTGAGCGTGAAGCAGATTTTATCAATTGC 27520 || || || ||||| |||| | || | || | || || || |||||||||||||| Sbjct 1232 GCTGTGAATCGTAATTTTACGAATCAAAGCGGGAATCGCGAGGCGGATTTTATCAATTGT 1173 Query 27521 GTTATCTGGCGCCAGCAAGCTGAAAATTTGGCTAATTGGGCTAAAAAAGGCGCATTGATT 27580 || || ||||| | ||| |||| ||| ||||||| || ||||| | | | Sbjct 1172 GTAATTTGGCGGAAATCAGCAGAAACTTTAGCTAATTATGCGCGCAAAGGAACTCTTTTA 1113 Query 27581 GGAATTACTGGACGTATTCAGACCCGTAGCTATGAAAACCAACAAGGGCAACGAGTGTAT 27640 || | ||||| ||||| || || | | |||||||| || ||||||||||| || ||| Sbjct 1112 GGTGTGACTGGCCGTATCCAAACAAGAAATTATGAAAATCAGCAAGGGCAACGTGTCTAT 1053 Query 27641 GTGACAGAGGTAGTCGCTGAGAACTTCCAAATGCTAGAAAGTCGTGCAGCGCGTGA 27696 |||||||| || || |||||||| |||||| | | ||| |||| | || |||| Sbjct 1052 GTGACAGAAGTTGTTGCTGAGAATTTCCAATTATTGGAATCTCGTACTGCAAGTGA 997 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 105809177794824