Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_031126.1 Length=244840 Score E Sequences producing significant alignments: (Bits) Value seq2319 93.3 7e-14 >seq2319 Length=3243 Score = 93.3 bits (102), Expect = 7e-14 Identities = 69/81 (85%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 3208 TATTGTCTCGTAGCTCAGTTGGTCAGAGCGCTCGCCTGATAAGCGGGAGGTCAGTGGTTC 3267 ||| | ||| |||||||| |||| ||||||| ||||||||||||| |||||| ||||||| Sbjct 990 TATGGGCTCATAGCTCAGGTGGTTAGAGCGCACGCCTGATAAGCGTGAGGTCGGTGGTTC 931 Query 3268 AAGTCCACTCGAGACAACCAA 3288 |||||||| ||| | ||||| Sbjct 930 GAGTCCACTTGAGCCCACCAA 910 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 783319304448000