Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_031907.1 Length=33181 Score E Sequences producing significant alignments: (Bits) Value seq729 149 1e-31 >seq729 Length=25020 Score = 149 bits (164), Expect = 1e-31 Identities = 228/320 (71%), Gaps = 4/320 (1%) Strand=Plus/Plus Query 24703 TACGACTTTCCAACAGTTGAAAATTACTGGCAACAACTTCTGTGACATAAACACGTTGAC 24762 ||||| |||||| | ||| ||||| |||||||||||||| ||||| |||||||| | Sbjct 1007 TACGAGATTCCAATAATTGGAAATTCTCAGCAACAACTTCTGTCACATAGACACGTTGCC 1066 Query 24763 CTTGCTGGTTATCATAGCTACGTGTTTGAATTACTCCTGTAACTCCGATAAGAGAGCCTT 24822 ||||||| || ||||| | | |||||| || || || || || | ||||| |||| Sbjct 1067 CTTGCTGATTTTCATAATTTCTTGTTTGGATACGGCCAGTCACACCTAAAAGAGTTCCTT 1126 Query 24823 TTTTAGCCCAATTAGCAAGATTTTCAGCTAACTGTCTCCAGATAACGCAATTGATAAAAT 24882 | || ||||||| | | |||| ||| | | | ||| || || ||||||||||||| Sbjct 1127 TGCGCGCATAATTAGCTAAAGTTTCTGCTGATTTCCGCCAAATTACACAATTGATAAAAT 1186 Query 24883 CAGCCTCACGCTCTCCAGCCTCG-TTCTTAAATGGACGGTTTACAGCAAGAGTAAACGTA 24941 | ||||| || | ||| || | | ||| |||| ||| || ||||| | ||||||||| Sbjct 1187 CCGCCTCGCGAT-TCCCGCTTTGATTCGTAAAATTACGATTCACAGCTAAAGTAAACGTG 1245 Query 24942 GCAACCGCAATATTAGATTGC-GTGTATCTCAGTTCGGCATCTCTTGTAAGTCGCCCTAC 25000 ||||| | || | |||| ||||| | | || | ||| |||| | || || || Sbjct 1246 GCAACACCTGTACCA-TTTGCGGTGTAGCGTAAATCAGGATCCTTTGTTAAACGACCAAC 1304 Query 25001 TAAAACAACGTTATTTATCA 25020 || ||||| ||||| |||| Sbjct 1305 TAGTACAACATTATTAATCA 1324 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 106052365792296