Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26]
4,156 sequences; 75,496,394 total letters
Query= NC_031907.1
Length=33181
Score E
Sequences producing significant alignments: (Bits) Value
seq729 149 1e-31
>seq729
Length=25020
Score = 149 bits (164), Expect = 1e-31
Identities = 228/320 (71%), Gaps = 4/320 (1%)
Strand=Plus/Plus
Query 24703 TACGACTTTCCAACAGTTGAAAATTACTGGCAACAACTTCTGTGACATAAACACGTTGAC 24762
||||| |||||| | ||| ||||| |||||||||||||| ||||| |||||||| |
Sbjct 1007 TACGAGATTCCAATAATTGGAAATTCTCAGCAACAACTTCTGTCACATAGACACGTTGCC 1066
Query 24763 CTTGCTGGTTATCATAGCTACGTGTTTGAATTACTCCTGTAACTCCGATAAGAGAGCCTT 24822
||||||| || ||||| | | |||||| || || || || || | ||||| ||||
Sbjct 1067 CTTGCTGATTTTCATAATTTCTTGTTTGGATACGGCCAGTCACACCTAAAAGAGTTCCTT 1126
Query 24823 TTTTAGCCCAATTAGCAAGATTTTCAGCTAACTGTCTCCAGATAACGCAATTGATAAAAT 24882
| || ||||||| | | |||| ||| | | | ||| || || |||||||||||||
Sbjct 1127 TGCGCGCATAATTAGCTAAAGTTTCTGCTGATTTCCGCCAAATTACACAATTGATAAAAT 1186
Query 24883 CAGCCTCACGCTCTCCAGCCTCG-TTCTTAAATGGACGGTTTACAGCAAGAGTAAACGTA 24941
| ||||| || | ||| || | | ||| |||| ||| || ||||| | |||||||||
Sbjct 1187 CCGCCTCGCGAT-TCCCGCTTTGATTCGTAAAATTACGATTCACAGCTAAAGTAAACGTG 1245
Query 24942 GCAACCGCAATATTAGATTGC-GTGTATCTCAGTTCGGCATCTCTTGTAAGTCGCCCTAC 25000
||||| | || | |||| ||||| | | || | ||| |||| | || || ||
Sbjct 1246 GCAACACCTGTACCA-TTTGCGGTGTAGCGTAAATCAGGATCCTTTGTTAAACGACCAAC 1304
Query 25001 TAAAACAACGTTATTTATCA 25020
|| ||||| ||||| ||||
Sbjct 1305 TAGTACAACATTATTAATCA 1324
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 106052365792296
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |