Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq1146 129 1e-24 seq199 127 4e-24 seq223 120 6e-22 seq215 105 1e-17 >seq1146 Length=12572 Score = 129 bits (142), Expect = 1e-24 Identities = 101/121 (83%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 301426 AAAATGGACCCCTATATCAACGTCGATCCGGGGACGATGAGCCCGACTCAACATGGAGAA 301485 ||| |||| || || |||||||||||||| || || |||||||| | ||||| || ||| Sbjct 3162 AAACTGGATCCGTACATCAACGTCGATCCAGGTACTATGAGCCCAATCCAACACGGGGAA 3103 Query 301486 GTGTTCGTGACGGATGATGGTGCTGAAACCGATCTGGATCTGGGGCACTACGAACGTTTC 301545 |||||||| || || || || ||||||||||| ||||| |||||||||||||| |||||| Sbjct 3102 GTGTTCGTTACTGAAGACGGCGCTGAAACCGACCTGGACCTGGGGCACTACGAGCGTTTC 3043 Query 301546 A 301546 | Sbjct 3042 A 3042 >seq199 Length=91904 Score = 127 bits (140), Expect = 4e-24 Identities = 324/486 (67%), Gaps = 12/486 (2%) Strand=Plus/Minus Query 273590 ATCTTTAGGGTTGTAACTCGGAACGTTCGTAGACCAACCGGTGCCAATACCGGAAGAACC 273649 |||| ||| || || |||| || || || ||||| | || || || || | || Sbjct 70251 ATCTCGAGGATTAAAATTCGGCACTTTAGTCGACCACGCCGTACCGATCCCTTCGGCGCC 70192 Query 273650 ATTCACCAGAATACTCGGGATAATTGGGACATAATATTCGGGCTCAATTTTATCACCATC 273709 ||| || | || | || | ||| ||| ||| |||| || || ||||| | | ||| Sbjct 70191 ATTGACTAAAACGGTGGGCAAAATGGGGCAATACCATTCCGGTTCGATTTTTTGATTATC 70132 Query 273710 GTCGTAAAGGTACTTCAACAAAGCATCATCCGT---ATCAACGAAAACCTTTCGCGTCTG 273766 ||| |||| || ||||| |||| || || | || || ||| || | || | ||| Sbjct 70131 GTCAAAAAGATAGTTCAAACAAGCTTCGTCGGCTGGATTAAACAAAGCCCT-CGTGACTG 70073 Query 273767 AGGATTCAGTTTCGTGAAAATGTACCTGGCACTCGCATGGTCCTTGCCACCTTGCAGCCT 273826 |||| || ||||| ||||| || | || || ||| || || |||||||| | Sbjct 70072 --GATTAAGCAGGGTGAAGATGTATCTAGGGCTAGCCGAGTCTTTCCCGCCTTGCAGACG 70015 Query 273827 CGAACCAAACTGACCCTCGGGCAGTAGCCAGTTTATGTTGTTGCTACCGACGTAATCCTG 273886 || || || ||||| ||||| ||| ||| || |||||||| ||||| | | || Sbjct 70014 CGTGCCGAATTGACCAATGGGCAACAGCAGGTTGATATTGTTGCTTCCGACAAAGTTGTG 69955 Query 273887 AGCCATATTCACGATAGTCCCC-TGAAGGGATACCTCGCCGTGGTGATAGGCGCTGTGTT 273945 |||| || || || || || | ||| | | |||||||| ||||||| || Sbjct 69954 CGCCAAGTTGACAATCGTAGCCATCAAGCTAG-CTTCGCCGTGATGATAGGAAGACATTT 69896 Query 273946 CGGCGATATAACCACTGAACTGAGCAACCTTCACATC--GCTCGTCAAGTTTCGCTTGAA 274003 |||| | |||| | |||||||||||| || || ||| ||| |||||||||||| Sbjct 69895 CGGCAACCGAACCGGCCAGCTGAGCAACCTTGACTTCTCGCTTGTC--GTTTCGCTTGAA 69838 Query 274004 TGCGGAATACAACACCTTCCGCTGCGAGGGCTTGAACCCATCAACGACCGATGGAATACT 274063 || |||||| ||||||||||| ||||| || || ||||| | || || ||||| Sbjct 69837 GCAGGTATACAAAACCTTCCGCTGNCCAGGCTTCAAACCGTCAACCAAAGACGGTATACT 69778 Query 274064 GCGTTC 274069 | ||| Sbjct 69777 TCTTTC 69772 >seq223 Length=82600 Score = 120 bits (132), Expect = 6e-22 Identities = 111/141 (79%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019 |||||||| |||| ||| || || ||| ||||| || || ||||| || ||||| || Sbjct 41216 CCGGCAAAAATCAGACGCTGCTGATCAGGAGGAATTCCTTCTTTGTCCTGTATCTTGGCC 41275 Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079 || ||| |||||||||||||||||| || ||||||||||| || || || || ||||| Sbjct 41276 TTCACGTTATCGATAGTGTCCGAAGGCTCCACTTCGAGAGTTATAGTTTTGCCTGTCAAT 41335 Query 283080 GTCTTAACGAATATCTGCATT 283100 || || || ||||| |||||| Sbjct 41336 GTTTTGACAAATATTTGCATT 41356 Score = 109 bits (120), Expect = 1e-18 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019 || |||||||| | || ||||| ||| ||||||||| || |||||||| || || | Sbjct 42634 CCAGCAAAGATTAGTCGCTGTTGATCAGGCGGAATACCTTCTTTGTCTTGTATTTTAGTC 42693 Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079 ||||| | || ||||| ||||||| ||| ||||| || || || ||||| || || | | Sbjct 42694 TTTACATTTTCAATAGTATCCGAAGGTTCCACTTCCAGCGTAATTGTCTTGCCAGTTAGA 42753 Query 283080 GTCTTAACGAATATCTGCAT 283099 || || |||||||||||||| Sbjct 42754 GTTTTCACGAATATCTGCAT 42773 Score = 104 bits (114), Expect = 5e-17 Identities = 82/97 (85%), Gaps = 1/97 (1%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| |||| |||||||||||||| ||||| ||||||||||| || |||||||||| | Sbjct 42493 CCACCCCGCAATCGAAGTACCAGATGCAACGTACTTTCTTTTTGTATATTGTAGTCAGAA 42552 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTT-CCCGGCAAAG 282968 || || ||||||||||| || ||||| || || |||| Sbjct 42553 AGAGTACGGCCATCCTCCAGCTGTTTGCCTGGAAAAG 42589 Score = 102 bits (112), Expect = 2e-16 Identities = 110/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 282955 GTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCT 283014 |||| || ||||| || || || || || || || |||||||| ||||||||||||| Sbjct 41493 GTTTACCTGCAAAAATTAATCGCTGCTGATCTGGTGGGATACCCTCTTTGTCTTGGATCT 41552 Query 283015 TTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCG 283074 | || || || | || || || ||||||| || ||||| | ||| || ||||| || | Sbjct 41553 TCGCCTTGACATTTTCTATGGTATCCGAAGGCTCCACTTCCAAAGTAATAGTCTTCCCTG 41612 Query 283075 TCAAAGTCTTAACGAATATCTGCATT 283100 ||| || || ||||||||||||||| Sbjct 41613 TCAGCGTTTTCACGAATATCTGCATT 41638 Score = 102 bits (112), Expect = 2e-16 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019 || ||||| || ||||||||||| ||| |||||||| ||||| || || || || ||| Sbjct 42068 CCAGCAAAAATTAAACGTTGTTGATCAGGTGGAATACCTTCCTTATCCTGAATTTTGGCT 42127 Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079 || ||| | || ||||||||||| | || ||||| || || || || || || || ||| Sbjct 42128 TTCACGTTTTCAATAGTGTCCGACGGCTCCACTTCCAGCGTTATTGTTTTTCCGGTTAAA 42187 Query 283080 GTCTTAACGAATATCTGCATT 283100 || || || || || |||||| Sbjct 42188 GTTTTCACAAAAATTTGCATT 42208 Score = 93.3 bits (102), Expect = 9e-14 Identities = 110/148 (74%), Gaps = 1/148 (1%) Strand=Plus/Plus Query 282953 TTGTTTC-CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGA 283011 ||| ||| || ||||| || || || || || ||| ||||| || || |||||||| | Sbjct 42344 TTGATTCACCAGCAAAAATTAATCGCTGCTGATCAGGTGGAATGCCTTCTTTGTCTTGTA 42403 Query 283012 TCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTAC 283071 | |||| ||| ||| | || || ||||| || | || |||||||| ||||| || || | Sbjct 42404 TTTTTGTTTTAACGTTTTCAATGGTGTCTGACGGCTCCACTTCGAGGGTGATTGTTTTTC 42463 Query 283072 CCGTCAAAGTCTTAACGAATATCTGCAT 283099 | || | || ||||||||||| ||||| Sbjct 42464 CAGTAAGCGTTTTAACGAATATTTGCAT 42491 Score = 86.0 bits (94), Expect = 1e-11 Identities = 73/90 (81%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||||| ||||| || ||||| | |||||||| ||||| ||||| ||||||| Sbjct 41926 ACCACCACGCAAACGAAGGACAAGATGAAGTGTGCTTTCCTTTTGAATGTTATAGTCAGA 41985 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCC 282961 || || || |||||||| |||||||| || Sbjct 41986 GAGTGTTCGCCCATCCTCGAGTTGTTTACC 42015 >seq215 Length=85622 Score = 105 bits (116), Expect = 1e-17 Identities = 160/226 (71%), Gaps = 4/226 (2%) Strand=Plus/Plus Query 273780 GTGAAAATGTACCTGGCACTCGCATGGTCCTTGCCACCTTGCAGCCTCGAACCAAACTGA 273839 |||||||| || || ||||| ||| |||||||||||||||| | | ||| || || Sbjct 40932 GTGAAAATATATCTTGCACTAGCAGCATCCTTGCCACCTTGCAAACGAGTACCGAATTGG 40991 Query 273840 CCCTCGGGCAGTAGCCAGTTTATGTTGTTGCTACCGACGTAATCCTGAGCCATATTCACG 273899 || | ||||| || ||| | ||||||||| || || | || || |||| ||| | Sbjct 40992 CCAACAGGCAGCAGTAGGTTGACGTTGTTGCTGCCCACAAAGTCGTGCGCCAAATTTATA 41051 Query 273900 ATAGTCCCCTGAAGGGATACCTCGCCGTGGTGATAGGCGCTGTGTTCGGCGATATAACCA 273959 ||||| ||| |||| | | |||||||| ||||| ||| |||||| | |||| Sbjct 41052 ATAGTTCCCATAAGGCTTGCTTCGCCGTGATGATAAGCGGAAGTTTCGGCAACTGAACCG 41111 Query 273960 CTGAACTGAGCAACCTTCAC--ATCGCTCGTCAAGTTTCGCTTGAA 274003 |||||||| || ||||| ||||| ||| ||| |||||||| Sbjct 41112 GCCAACTGAGCCACTTTCACTTCTCGCTTGTC--GTTACGCTTGAA 41155 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046683462446024