Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq223 86.0 5e-12 >seq223 Length=82600 Score = 86.0 bits (94), Expect = 5e-12 Identities = 110/152 (72%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 44187 CCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCG 44246 ||||| ||| ||||||||||| | ||||||||||||| ||| | |||||||| || Sbjct 43189 CCAGCCACTTACCGGCAAAGATTAGTCGCTGCTGATCTGGAGGGATTCCTTCCTTATCTT 43248 Query 44247 TTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 || ||| ||||| | | ||||| |||| | || || |||| |||||| || | Sbjct 43249 GAATTTTCGTCTTCACGTTATCAATGGTATCGGACGGCTCAACTTCCAGCGTAATAGTTT 43308 Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 | || || || || ||||| || || |||||| Sbjct 43309 TGCCGGTTAGCGTTTTCACAAATATCTGCATG 43340 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359972166036252