Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26]
4,156 sequences; 75,496,394 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq223 113 1e-19
>seq223
Length=82600
Score = 113 bits (124), Expect = 1e-19
Identities = 107/137 (78%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
||||| ||||| ||||| || || |||||||| ||||||||||| ||||| ||||||
Sbjct 42488 CAAATATTCGTTAAAACGCTTACTGGAAAAACAATCACCCTCGAAGTGGAGCCGTCAGAC 42429
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
||||| || ||||| ||| ||| || || ||||||||||| || || || || |||||
Sbjct 42428 ACCATTGAAAACGTTAAAACAAAAATACAAGACAAAGAAGGCATTCCACCTGATCAGCAG 42369
Query 178044 CGACTTATCTTCGCCGG 178060
||| | || || || ||
Sbjct 42368 CGATTAATTTTTGCTGG 42352
Score = 105 bits (116), Expect = 2e-17
Identities = 108/141 (77%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
||||||||||| || || | || || || || ||||| || || || || ||||||
Sbjct 43055 CAAATTTTCGTCAAGACATTGACGGGCAAGACTATCACTCTTGAAGTAGAGCCGTCAGAC 42996
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
||||| ||||| || || |||||||| ||||||||||| || || || ||||||||
Sbjct 42995 ACCATTGAGAATGTTAAGACTAAGATTCAAGACAAAGAAGGTATTCCACCTGACCAGCAG 42936
Query 178044 CGACTTATCTTCGCCGGAAAA 178064
|| ||||||||||| || |||
Sbjct 42935 CGTCTTATCTTCGCAGGTAAA 42915
Score = 104 bits (114), Expect = 6e-17
Identities = 105/137 (77%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
||||| || || ||||| | ||||| ||||| || || ||||| ||||| || |||
Sbjct 41352 CAAATATTTGTCAAAACATTGACAGGCAAAACTATAACTCTCGAAGTGGAGCCTTCGGAC 41293
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| ||||| ||||| || ||||| ||||||||||||||||| ||||| || |||||
Sbjct 41292 ACTATCGATAACGTGAAGGCCAAGATACAGGACAAAGAAGGAATTCCTCCTGATCAGCAG 41233
Query 178044 CGACTTATCTTCGCCGG 178060
|| || || || |||||
Sbjct 41232 CGTCTGATTTTTGCCGG 41216
Score = 98.7 bits (108), Expect = 2e-15
Identities = 109/143 (76%), Gaps = 2/143 (1%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
||||| || ||||||||||| || || ||||| |||||||| || || || || ||
Sbjct 41922 CAAATCTTTGTGAAAACTCTAACTGGCAAAACAATCACCCTGGAAGTCGAGCCGTCGGAT 41863
Query 177984 ACCATCGAGAACGTCAA-ACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCA 178042
|| ||||||||||| || || ||| ||||| || || || || || || || ||||| ||
Sbjct 41862 ACGATCGAGAACGTAAAGACGAAA-ATTCAAGATAAGGAGGGGATACCACCCGACCAACA 41804
Query 178043 ACGACTTATCTTCGCCGGAAAAC 178065
|| || || |||||||| ||||
Sbjct 41803 GCGCCTGATTTTCGCCGGTAAAC 41781
Score = 98.7 bits (108), Expect = 2e-15
Identities = 104/137 (76%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| ||||| || || ||| | || || ||||| || || | || |||||| || |||
Sbjct 43632 CAGATTTTTGTCAAGACTTTAACCGGCAAAACAATAACATTAGAAGTGGAACCTTCGGAC 43573
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| | |||||||| || ||| ||||||||||| ||||| ||||| ||||| ||||||
Sbjct 43572 ACGGTTGAGAACGTAAAGGCAAAAATTCAGGACAAGGAAGGCATCCCCCCGGATCAGCAA 43513
Query 178044 CGACTTATCTTCGCCGG 178060
|| | |||||||||||
Sbjct 43512 CGGTTGATCTTCGCCGG 43496
Score = 95.1 bits (104), Expect = 3e-14
Identities = 107/141 (76%), Gaps = 2/141 (1%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || || |||||||| || || || ||||| || || || || || || || ||
Sbjct 43336 CAGATATTTGTGAAAACGCTAACCGGCAAAACTATTACGCTGGAAGTTGAGCCGTCCGAT 43277
Query 177984 ACCATCGAGAACGTCAA-ACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCA 178042
||||| || ||||| || || ||| ||||| || || |||||||||||||| || |||||
Sbjct 43276 ACCATTGATAACGTGAAGACGAAA-ATTCAAGATAAGGAAGGAATCCCTCCAGATCAGCA 43218
Query 178043 ACGACTTATCTTCGCCGGAAA 178063
||||| ||||| ||||| ||
Sbjct 43217 GCGACTAATCTTTGCCGGTAA 43197
Score = 89.7 bits (98), Expect = 1e-12
Identities = 102/137 (74%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| |||||||||||||| ||||| |||||||| || || || || || || || |||
Sbjct 43913 CAGATTTTCGTGAAAACGCTCACGGGAAAAACCATTACGCTTGAAGTTGAGCCGTCTGAC 43854
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
| || || || || || | || ||||| || || ||||| || |||||||| || ||
Sbjct 43853 TCAATTGAAAATGTGAAGAATAAAATTCAAGATAAGGAAGGCATTCCTCCGGATCAACAG 43794
Query 178044 CGACTTATCTTCGCCGG 178060
|| || |||||||| ||
Sbjct 43793 CGTCTAATCTTCGCAGG 43777
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1203667102818264
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |