Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq223 113 1e-19 >seq223 Length=82600 Score = 113 bits (124), Expect = 1e-19 Identities = 107/137 (78%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| ||||| || || |||||||| ||||||||||| ||||| |||||| Sbjct 42488 CAAATATTCGTTAAAACGCTTACTGGAAAAACAATCACCCTCGAAGTGGAGCCGTCAGAC 42429 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || ||||| ||| ||| || || ||||||||||| || || || || ||||| Sbjct 42428 ACCATTGAAAACGTTAAAACAAAAATACAAGACAAAGAAGGCATTCCACCTGATCAGCAG 42369 Query 178044 CGACTTATCTTCGCCGG 178060 ||| | || || || || Sbjct 42368 CGATTAATTTTTGCTGG 42352 Score = 105 bits (116), Expect = 2e-17 Identities = 108/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| || || | || || || || ||||| || || || || |||||| Sbjct 43055 CAAATTTTCGTCAAGACATTGACGGGCAAGACTATCACTCTTGAAGTAGAGCCGTCAGAC 42996 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| ||||| || || |||||||| ||||||||||| || || || |||||||| Sbjct 42995 ACCATTGAGAATGTTAAGACTAAGATTCAAGACAAAGAAGGTATTCCACCTGACCAGCAG 42936 Query 178044 CGACTTATCTTCGCCGGAAAA 178064 || ||||||||||| || ||| Sbjct 42935 CGTCTTATCTTCGCAGGTAAA 42915 Score = 104 bits (114), Expect = 6e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || ||||| | ||||| ||||| || || ||||| ||||| || ||| Sbjct 41352 CAAATATTTGTCAAAACATTGACAGGCAAAACTATAACTCTCGAAGTGGAGCCTTCGGAC 41293 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| ||||| || ||||| ||||||||||||||||| ||||| || ||||| Sbjct 41292 ACTATCGATAACGTGAAGGCCAAGATACAGGACAAAGAAGGAATTCCTCCTGATCAGCAG 41233 Query 178044 CGACTTATCTTCGCCGG 178060 || || || || ||||| Sbjct 41232 CGTCTGATTTTTGCCGG 41216 Score = 98.7 bits (108), Expect = 2e-15 Identities = 109/143 (76%), Gaps = 2/143 (1%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || ||||||||||| || || ||||| |||||||| || || || || || Sbjct 41922 CAAATCTTTGTGAAAACTCTAACTGGCAAAACAATCACCCTGGAAGTCGAGCCGTCGGAT 41863 Query 177984 ACCATCGAGAACGTCAA-ACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCA 178042 || ||||||||||| || || ||| ||||| || || || || || || || ||||| || Sbjct 41862 ACGATCGAGAACGTAAAGACGAAA-ATTCAAGATAAGGAGGGGATACCACCCGACCAACA 41804 Query 178043 ACGACTTATCTTCGCCGGAAAAC 178065 || || || |||||||| |||| Sbjct 41803 GCGCCTGATTTTCGCCGGTAAAC 41781 Score = 98.7 bits (108), Expect = 2e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||| || || ||| | || || ||||| || || | || |||||| || ||| Sbjct 43632 CAGATTTTTGTCAAGACTTTAACCGGCAAAACAATAACATTAGAAGTGGAACCTTCGGAC 43573 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || | |||||||| || ||| ||||||||||| ||||| ||||| ||||| |||||| Sbjct 43572 ACGGTTGAGAACGTAAAGGCAAAAATTCAGGACAAGGAAGGCATCCCCCCGGATCAGCAA 43513 Query 178044 CGACTTATCTTCGCCGG 178060 || | ||||||||||| Sbjct 43512 CGGTTGATCTTCGCCGG 43496 Score = 95.1 bits (104), Expect = 3e-14 Identities = 107/141 (76%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || |||||||| || || || ||||| || || || || || || || || Sbjct 43336 CAGATATTTGTGAAAACGCTAACCGGCAAAACTATTACGCTGGAAGTTGAGCCGTCCGAT 43277 Query 177984 ACCATCGAGAACGTCAA-ACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCA 178042 ||||| || ||||| || || ||| ||||| || || |||||||||||||| || ||||| Sbjct 43276 ACCATTGATAACGTGAAGACGAAA-ATTCAAGATAAGGAAGGAATCCCTCCAGATCAGCA 43218 Query 178043 ACGACTTATCTTCGCCGGAAA 178063 ||||| ||||| ||||| || Sbjct 43217 GCGACTAATCTTTGCCGGTAA 43197 Score = 89.7 bits (98), Expect = 1e-12 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||||||||| ||||| |||||||| || || || || || || || ||| Sbjct 43913 CAGATTTTCGTGAAAACGCTCACGGGAAAAACCATTACGCTTGAAGTTGAGCCGTCTGAC 43854 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | || || || || || | || ||||| || || ||||| || |||||||| || || Sbjct 43853 TCAATTGAAAATGTGAAGAATAAAATTCAAGATAAGGAAGGCATTCCTCCGGATCAACAG 43794 Query 178044 CGACTTATCTTCGCCGG 178060 || || |||||||| || Sbjct 43793 CGTCTAATCTTCGCAGG 43777 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203667102818264