Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Wuchereria_20bancrofti_20[genbank_20GCA_5F001555675.1_202016-02-09] 5,105 sequences; 90,325,107 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq4699 84.2 3e-11 seq3785 84.2 3e-11 >seq4699 Length=50124 Score = 84.2 bits (92), Expect = 3e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 62754 AGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTA 62813 || || || || || ||||| |||||||||||||| || || || | |||||| ||||| Sbjct 23420 AGGATGAAAGCATCAGCTAAGCCTTGAACACCAATGCCAATCGGACGATGTCTTTTATTG 23479 Query 62814 GAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTG 62873 || ||| ||||| || | ||||||||||| ||| || | |||||| | ||| | Sbjct 23480 GATCGTTCCGCTTCCGGTACTGGATAATAATTGCGATCAATGACTTTATTCAAATTCTTA 23539 Query 62874 ACAATTACTTT 62884 || | |||||| Sbjct 23540 ACTACTACTTT 23550 >seq3785 Length=14585 Score = 84.2 bits (92), Expect = 3e-11 Identities = 67/81 (83%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 33290 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATT 33349 ||| ||||| || | ||||||||||||||||||||||||||| |||| | |||||| Sbjct 5168 TTTCTGGTACTCGCTGACACGTTTTTCGAAAAAATTAGTTTTTGCTTCGATCGATATACG 5227 Query 33350 TTCCATGAAATCAAACGGATT 33370 |||||||||||||| || || Sbjct 5228 CTCCATGAAATCAAATGGGTT 5248 Score = 84.2 bits (92), Expect = 3e-11 Identities = 76/96 (79%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 34080 ACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGA 34139 || || || || ||||||||||||||| || || ||||| | | ||| ||||||||| Sbjct 7037 ACCTCATCAACGGTCCAAAATGATGCCAAGGCTTTCTTATAAAAACCCCAAATGTCATGA 7096 Query 34140 TATTGGATTGGGAAAATAACAAATCTATTTGGATTT 34175 ||| ||| ||||| |||||||| | |||||||||| Sbjct 7097 AATTTGATAGGGAATATAACAAAACGATTTGGATTT 7132 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629777409764400