Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Wuchereria_20bancrofti_20[genbank_20GCA_5F001555675.1_202016-02-09] 5,105 sequences; 90,325,107 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq4130 91.5 1e-13 seq4574 82.4 8e-11 >seq4130 Length=21019 Score = 91.5 bits (100), Expect = 1e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 143042 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTT 143101 ||||||||| | || || || |||||||| ||||| || |||||||| || ||| || Sbjct 12548 TTACCAGCAAAAATAAGGCGCTGCTGATCCGGAGGGATCCCTTCTTTATCCTGAATCTTG 12607 Query 143102 TGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTC 143161 |||| | ||| | ||||| | | || ||||| | || | ||||||||| ||| Sbjct 12608 GCCTTTACATTTTCGATTGTGTCAGAAGCCTCAACTTCTAAGGTGATCGTCTTGCCCGTC 12667 Query 143162 AATGTTTTTACGAATATTTGCAT 143184 ||||||||||| || |||||||| Sbjct 12668 AATGTTTTTACAAAAATTTGCAT 12690 >seq4574 Length=39733 Score = 82.4 bits (90), Expect = 8e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 143042 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTT 143101 ||||||||| | || || || |||||||| ||||| || |||||||| || ||| || Sbjct 21535 TTACCAGCAAAAATGAGGCGCTGCTGATCCGGAGGAATCCCTTCTTTATCCTGAATCTTG 21594 Query 143102 TGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTC 143161 || | | ||| | || || | | || ||||| | || | ||||||||| ||| Sbjct 21595 GCCTTCACATTTTCGATTGTATCAGAAGCCTCAACTTCTAAGGTGATCGTCTTGCCCGTC 21654 Query 143162 AATGTTTTTACGAATATTTGCAT 143184 ||||||||||| || |||||||| Sbjct 21655 AATGTTTTTACAAAAATTTGCAT 21677 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506982046143600