Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Wuchereria_20bancrofti_20[genbank_20GCA_5F001555675.1_202016-02-09] 5,105 sequences; 90,325,107 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq4209 93.3 3e-14 seq3175 93.3 3e-14 seq4574 89.7 4e-13 >seq4209 Length=23298 Score = 93.3 bits (102), Expect = 3e-14 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 43982 CCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGT 44041 |||||||| |||||||| ||||| || | |||| |||||||| || ||||| | Sbjct 2530 CCTGCAAAAATCAACCGCTGCTGATCTGGGGGTATGCCTTCTTTGTCCTGTATTTTCGCT 2589 Query 44042 TTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAA 44101 || || | ||| ||||| | | || || || | |||||| |||||||| |||||| Sbjct 2590 TTTACATTCTCAATTGTATCCGAGGATTCGACCTCAAGCGTAATCGTTTTACCAGTTAAA 2649 Query 44102 GTCTTCACAAATATTTGCATG 44122 ||||| ||||| ||||||||| Sbjct 2650 GTCTTGACAAAAATTTGCATG 2670 >seq3175 Length=8402 Score = 93.3 bits (102), Expect = 3e-14 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 43982 CCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGT 44041 |||||||| |||||||| ||||| || | |||| |||||||| || ||||| | Sbjct 5252 CCTGCAAAAATCAACCGCTGCTGATCTGGGGGTATGCCTTCTTTGTCCTGTATTTTCGCT 5193 Query 44042 TTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAA 44101 || || | ||| ||||| | | || || || | |||||| |||||||| |||||| Sbjct 5192 TTTACATTCTCAATTGTATCCGAGGATTCGACCTCAAGCGTAATCGTTTTACCAGTTAAA 5133 Query 44102 GTCTTCACAAATATTTGCATG 44122 ||||| ||||| ||||||||| Sbjct 5132 GTCTTGACAAAAATTTGCATG 5112 >seq4574 Length=39733 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 43913 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCC 43972 |||| || ||||| ||| || ||||||||||||||| ||| ||| | || ||| Sbjct 20834 ACCAGGTGCAGCGTCGACTCCTTCTGAATATTATAATCGGACAATGTACGACCGTCCTCC 20893 Query 43973 AATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAA 44032 | || || || ||||| |||| || ||||| || | || | ||||| || || Sbjct 20894 AGCTGCTTGCCCGCAAAGATCAGTCGCTGCTGATCTGGTGGAATGCCTTCCTTGTCCTGG 20953 Query 44033 ATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTA 44092 || ||| |||||| | | | |||||| | | |||||| || | || || || ||| Sbjct 20954 ATCTTTGCTTTGACGTTTTCGATAGTATCAGAAGCCTCCACTTCTAGTGTTATGGTCTTA 21013 Query 44093 CCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || || |||||||| ||||| || ||||| Sbjct 21014 CCCGTCAAAGTCTTTACAAAAATCTGCAT 21042 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354755526735540