Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Wuchereria_20bancrofti_20[genbank_20GCA_5F001555675.1_202016-02-09] 5,105 sequences; 90,325,107 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq4574 143 6e-29 seq4130 125 2e-23 seq4330 111 4e-19 seq4209 107 4e-18 seq3175 107 4e-18 >seq4574 Length=39733 Score = 143 bits (158), Expect = 6e-29 Identities = 160/214 (75%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || || || | || || || |||||||||||||| || || | || | |||||| Sbjct 20830 AAGAACCAGGTGCAGCGTCGACTCCTTCTGAATATTATAATCGGACAATGTACGACCGTC 20889 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 || || || || || ||||| || || | ||| ||||| || || || ||||| || || Sbjct 20890 CTCCAGCTGCTTGCCCGCAAAGATCAGTCGCTGCTGATCTGGTGGAATGCCTTCCTTGTC 20949 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 ||| ||||||||||| || ||||| | ||||| || || || |||||||| || || Sbjct 20950 CTGGATCTTTGCTTTGACGTTTTCGATAGTATCAGAAGCCTCCACTTCTAGTGTTATGGT 21009 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 |||||| || | || |||||||| ||||||||| Sbjct 21010 CTTACCCGTCAAAGTCTTTACAAAAATCTGCATT 21043 Score = 118 bits (130), Expect = 2e-21 Identities = 112/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 || ||||||||||| || | ||| ||||| ||||| || |||||||||||||||||||| Sbjct 21535 TTACCAGCAAAAATGAGGCGCTGCTGATCCGGAGGAATCCCTTCTTTATCCTGAATCTTG 21594 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536 || || |||||||| | ||||| || || || |||| || || ||||| || || Sbjct 21595 GCCTTCACATTTTCGATTGTATCAGAAGCCTCAACTTCTAAGGTGATCGTCTTGCCCGTC 21654 Query 104537 AGTGTTTTTACAAATATCTGCAT 104559 | |||||||||||| || ||||| Sbjct 21655 AATGTTTTTACAAAAATTTGCAT 21677 >seq4130 Length=21019 Score = 125 bits (138), Expect = 2e-23 Identities = 156/214 (73%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| ||||| || | || || || ||||||||||| || || || | || | |||||| Sbjct 11843 AAGAACTAGGTGCAGCGTCGACTCCTTCTGAATATTGTAATCGGACAATGTACGACCGTC 11902 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 || || || || || ||||| || || | ||| ||||| || || || ||||| || || Sbjct 11903 CTCCAGCTGCTTGCCCGCAAAGATCAGTCGCTGCTGATCTGGTGGAATGCCTTCCTTGTC 11962 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 ||| || |||||||| || ||||| | ||||| || || || || ||||| || || Sbjct 11963 CTGGATTTTTGCTTTGACGTTTTCGATAGTATCAGAAGCCTCCACTTCGAGTGTTATGGT 12022 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 ||||| || | || |||||||| || |||||| Sbjct 12023 TTTACCCGTCAAAGTCTTTACAAAAATTTGCATT 12056 Score = 118 bits (130), Expect = 2e-21 Identities = 112/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 || ||||||||||| || | ||| ||||| ||||| || |||||||||||||||||||| Sbjct 12548 TTACCAGCAAAAATAAGGCGCTGCTGATCCGGAGGGATCCCTTCTTTATCCTGAATCTTG 12607 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536 || ||||||||||| | || || || || || |||| || || ||||| || || Sbjct 12608 GCCTTTACATTTTCGATTGTGTCAGAAGCCTCAACTTCTAAGGTGATCGTCTTGCCCGTC 12667 Query 104537 AGTGTTTTTACAAATATCTGCAT 104559 | |||||||||||| || ||||| Sbjct 12668 AATGTTTTTACAAAAATTTGCAT 12690 >seq4330 Length=27005 Score = 111 bits (122), Expect = 4e-19 Identities = 111/144 (77%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479 || |||||||| || | || |||||||| || || || || ||||||||||| || | Sbjct 21274 CCTGCAAAAATAAGTCGTTGCTGATCAGGTGGAATACCCTCCTTATCCTGAATTTTAGTC 21215 Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539 || ||||| || | |||||| | ||||||||| || ||||| ||||| ||||| | Sbjct 21214 TTCACATTCTCAATAGTATCGGACGATTCTACCTCAAGGGTAATCGTCTTTCCAGTTAAC 21155 Query 104540 GTTTTTACAAATATCTGCATTTTG 104563 ||||| |||||||||||||| ||| Sbjct 21154 GTTTTCACAAATATCTGCATCTTG 21131 >seq4209 Length=23298 Score = 107 bits (118), Expect = 4e-18 Identities = 110/141 (78%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479 || |||||||| | || ||| ||||| || ||||| |||||||| ||||| || || ||| Sbjct 2530 CCTGCAAAAATCAACCGCTGCTGATCTGGGGGTATGCCTTCTTTGTCCTGTATTTTCGCT 2589 Query 104480 TTTACATTTTCTACGGTATCGCTAGG-TTCTACCTCTAGTGTAATAGTCTTACCAGTAAG 104538 |||||||| || | ||||| | ||| ||| ||||| || ||||| || |||||||| | Sbjct 2590 TTTACATTCTCAATTGTATC-CGAGGATTCGACCTCAAGCGTAATCGTTTTACCAGTTAA 2648 Query 104539 TGTTTTTACAAATATCTGCAT 104559 || || ||||| || ||||| Sbjct 2649 AGTCTTGACAAAAATTTGCAT 2669 >seq3175 Length=8402 Score = 107 bits (118), Expect = 4e-18 Identities = 110/141 (78%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479 || |||||||| | || ||| ||||| || ||||| |||||||| ||||| || || ||| Sbjct 5252 CCTGCAAAAATCAACCGCTGCTGATCTGGGGGTATGCCTTCTTTGTCCTGTATTTTCGCT 5193 Query 104480 TTTACATTTTCTACGGTATCGCTAGG-TTCTACCTCTAGTGTAATAGTCTTACCAGTAAG 104538 |||||||| || | ||||| | ||| ||| ||||| || ||||| || |||||||| | Sbjct 5192 TTTACATTCTCAATTGTATC-CGAGGATTCGACCTCAAGCGTAATCGTTTTACCAGTTAA 5134 Query 104539 TGTTTTTACAAATATCTGCAT 104559 || || ||||| || ||||| Sbjct 5133 AGTCTTGACAAAAATTTGCAT 5113 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151323089549340