Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Wuchereria_20bancrofti_20[genbank_20GCA_5F001555675.1_202016-02-09]
5,105 sequences; 90,325,107 total letters
Query= NC_005309.1
Length=359853
Score E
Sequences producing significant alignments: (Bits) Value
seq4574 143 6e-29
seq4130 125 2e-23
seq4330 111 4e-19
seq4209 107 4e-18
seq3175 107 4e-18
>seq4574
Length=39733
Score = 143 bits (158), Expect = 6e-29
Identities = 160/214 (75%), Gaps = 0/214 (0%)
Strand=Plus/Plus
Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406
||| || || || | || || || |||||||||||||| || || | || | ||||||
Sbjct 20830 AAGAACCAGGTGCAGCGTCGACTCCTTCTGAATATTATAATCGGACAATGTACGACCGTC 20889
Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466
|| || || || || ||||| || || | ||| ||||| || || || ||||| || ||
Sbjct 20890 CTCCAGCTGCTTGCCCGCAAAGATCAGTCGCTGCTGATCTGGTGGAATGCCTTCCTTGTC 20949
Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526
||| ||||||||||| || ||||| | ||||| || || || |||||||| || ||
Sbjct 20950 CTGGATCTTTGCTTTGACGTTTTCGATAGTATCAGAAGCCTCCACTTCTAGTGTTATGGT 21009
Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560
|||||| || | || |||||||| |||||||||
Sbjct 21010 CTTACCCGTCAAAGTCTTTACAAAAATCTGCATT 21043
Score = 118 bits (130), Expect = 2e-21
Identities = 112/143 (78%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476
|| ||||||||||| || | ||| ||||| ||||| || ||||||||||||||||||||
Sbjct 21535 TTACCAGCAAAAATGAGGCGCTGCTGATCCGGAGGAATCCCTTCTTTATCCTGAATCTTG 21594
Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536
|| || |||||||| | ||||| || || || |||| || || ||||| || ||
Sbjct 21595 GCCTTCACATTTTCGATTGTATCAGAAGCCTCAACTTCTAAGGTGATCGTCTTGCCCGTC 21654
Query 104537 AGTGTTTTTACAAATATCTGCAT 104559
| |||||||||||| || |||||
Sbjct 21655 AATGTTTTTACAAAAATTTGCAT 21677
>seq4130
Length=21019
Score = 125 bits (138), Expect = 2e-23
Identities = 156/214 (73%), Gaps = 0/214 (0%)
Strand=Plus/Plus
Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406
||| ||||| || | || || || ||||||||||| || || || | || | ||||||
Sbjct 11843 AAGAACTAGGTGCAGCGTCGACTCCTTCTGAATATTGTAATCGGACAATGTACGACCGTC 11902
Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466
|| || || || || ||||| || || | ||| ||||| || || || ||||| || ||
Sbjct 11903 CTCCAGCTGCTTGCCCGCAAAGATCAGTCGCTGCTGATCTGGTGGAATGCCTTCCTTGTC 11962
Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526
||| || |||||||| || ||||| | ||||| || || || || ||||| || ||
Sbjct 11963 CTGGATTTTTGCTTTGACGTTTTCGATAGTATCAGAAGCCTCCACTTCGAGTGTTATGGT 12022
Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560
||||| || | || |||||||| || ||||||
Sbjct 12023 TTTACCCGTCAAAGTCTTTACAAAAATTTGCATT 12056
Score = 118 bits (130), Expect = 2e-21
Identities = 112/143 (78%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476
|| ||||||||||| || | ||| ||||| ||||| || ||||||||||||||||||||
Sbjct 12548 TTACCAGCAAAAATAAGGCGCTGCTGATCCGGAGGGATCCCTTCTTTATCCTGAATCTTG 12607
Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536
|| ||||||||||| | || || || || || |||| || || ||||| || ||
Sbjct 12608 GCCTTTACATTTTCGATTGTGTCAGAAGCCTCAACTTCTAAGGTGATCGTCTTGCCCGTC 12667
Query 104537 AGTGTTTTTACAAATATCTGCAT 104559
| |||||||||||| || |||||
Sbjct 12668 AATGTTTTTACAAAAATTTGCAT 12690
>seq4330
Length=27005
Score = 111 bits (122), Expect = 4e-19
Identities = 111/144 (77%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479
|| |||||||| || | || |||||||| || || || || ||||||||||| || |
Sbjct 21274 CCTGCAAAAATAAGTCGTTGCTGATCAGGTGGAATACCCTCCTTATCCTGAATTTTAGTC 21215
Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539
|| ||||| || | |||||| | ||||||||| || ||||| ||||| ||||| |
Sbjct 21214 TTCACATTCTCAATAGTATCGGACGATTCTACCTCAAGGGTAATCGTCTTTCCAGTTAAC 21155
Query 104540 GTTTTTACAAATATCTGCATTTTG 104563
||||| |||||||||||||| |||
Sbjct 21154 GTTTTCACAAATATCTGCATCTTG 21131
>seq4209
Length=23298
Score = 107 bits (118), Expect = 4e-18
Identities = 110/141 (78%), Gaps = 2/141 (1%)
Strand=Plus/Plus
Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479
|| |||||||| | || ||| ||||| || ||||| |||||||| ||||| || || |||
Sbjct 2530 CCTGCAAAAATCAACCGCTGCTGATCTGGGGGTATGCCTTCTTTGTCCTGTATTTTCGCT 2589
Query 104480 TTTACATTTTCTACGGTATCGCTAGG-TTCTACCTCTAGTGTAATAGTCTTACCAGTAAG 104538
|||||||| || | ||||| | ||| ||| ||||| || ||||| || |||||||| |
Sbjct 2590 TTTACATTCTCAATTGTATC-CGAGGATTCGACCTCAAGCGTAATCGTTTTACCAGTTAA 2648
Query 104539 TGTTTTTACAAATATCTGCAT 104559
|| || ||||| || |||||
Sbjct 2649 AGTCTTGACAAAAATTTGCAT 2669
>seq3175
Length=8402
Score = 107 bits (118), Expect = 4e-18
Identities = 110/141 (78%), Gaps = 2/141 (1%)
Strand=Plus/Minus
Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479
|| |||||||| | || ||| ||||| || ||||| |||||||| ||||| || || |||
Sbjct 5252 CCTGCAAAAATCAACCGCTGCTGATCTGGGGGTATGCCTTCTTTGTCCTGTATTTTCGCT 5193
Query 104480 TTTACATTTTCTACGGTATCGCTAGG-TTCTACCTCTAGTGTAATAGTCTTACCAGTAAG 104538
|||||||| || | ||||| | ||| ||| ||||| || ||||| || |||||||| |
Sbjct 5192 TTTACATTCTCAATTGTATC-CGAGGATTCGACCTCAAGCGTAATCGTTTTACCAGTTAA 5134
Query 104539 TGTTTTTACAAATATCTGCAT 104559
|| || ||||| || |||||
Sbjct 5133 AGTCTTGACAAAAATTTGCAT 5113
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1151323089549340
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |