Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Wuchereria_20bancrofti_20[genbank_20GCA_5F001555675.1_202016-02-09]
5,105 sequences; 90,325,107 total letters
Query= NC_006549.1
Length=140131
Score E
Sequences producing significant alignments: (Bits) Value
seq4574 105 6e-18
seq4130 100 3e-16
>seq4574
Length=39733
Score = 105 bits (116), Expect = 6e-18
Identities = 151/211 (72%), Gaps = 4/211 (2%)
Strand=Plus/Plus
Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA--TCCT 94856
|||| ||||| || || ||||| || | ||||||||| || ||| || ||||
Sbjct 20834 ACCAGGTGCAGCGTCGACTCCTTCTGAATATTATAATCGGACAA--TGTACGACCGTCCT 20891
Query 94857 CCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCAT 94916
||||||| || || ||||||| | || ||||||||||| ||||| ||||| ||||| |
Sbjct 20892 CCAGCTGCTTGCCCGCAAAGATCAGTCGCTGCTGATCTGGTGGAATGCCTTCCTTGTCCT 20951
Query 94917 AAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTT 94976
|| ||||| |||||| ||| ||| |||| || || || | || ||||| |
Sbjct 20952 GGATCTTTGCTTTGACGTTTTCGATAGTATCAGAAGCCTCCACTTCTAGTGTTATGGTCT 21011
Query 94977 TTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
| || || | ||| || ||||| ||||||||
Sbjct 21012 TACCCGTCAAAGTCTTTACAAAAATCTGCAT 21042
Score = 84.2 bits (92), Expect = 2e-11
Identities = 99/134 (74%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 94874 AAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACG 94933
||||| |||| ||||| ||||| ||||| || || ||||| | ||||||||||| ||
Sbjct 21890 AAGATCAATCGCTGCTGGTCTGGCGGAATTCCCTCCTTGTCCTGGATTTTTGCCTTAACA 21949
Query 94934 GCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTC 94993
||| || |||| || || || | ||||| ||||| || |||||||||||
Sbjct 21950 TTCTCGATGGTATCAGATGCTTCCACTTCCAATGTGATTGTTTTACCGGTAAGAGTTTTA 22009
Query 94994 ACAAAGATCTGCAT 95007
|||||||| |||||
Sbjct 22010 ACAAAGATTTGCAT 22023
Score = 82.4 bits (90), Expect = 7e-11
Identities = 96/130 (74%), Gaps = 0/130 (0%)
Strand=Plus/Plus
Query 94886 TGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTG 94945
||||| ||||| || ||||| || ||||| | |||||||| || || | | |||
Sbjct 22226 TGCTGGTCTGGCGGGATACCCTCCTTGTCTTGTATTTTTGCTTTAACATTTTCAATTGTG 22285
Query 94946 TCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGC 95005
|| | || || |||| ||||| ||||||||||| || |||||||| ||||| |||
Sbjct 22286 TCTGAAGCCTCCACTTCAAGAGTGATTGTTTTTCCAGTCAGTGTTTTCACGAAGATTTGC 22345
Query 95006 ATGCTTACAA 95015
||| ||||||
Sbjct 22346 ATGTTTACAA 22355
>seq4130
Length=21019
Score = 100 bits (110), Expect = 3e-16
Identities = 147/206 (71%), Gaps = 4/206 (2%)
Strand=Plus/Plus
Query 94804 GTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA--TCCTCCAGC 94861
||||| || || ||||| || | || |||||| || ||| || |||||||||
Sbjct 11852 GTGCAGCGTCGACTCCTTCTGAATATTGTAATCGGACAA--TGTACGACCGTCCTCCAGC 11909
Query 94862 TGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATT 94921
|| || || ||||||| | || ||||||||||| ||||| ||||| ||||| | |||
Sbjct 11910 TGCTTGCCCGCAAAGATCAGTCGCTGCTGATCTGGTGGAATGCCTTCCTTGTCCTGGATT 11969
Query 94922 TTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCA 94981
||||| |||||| ||| ||| |||| || || || | || |||||||| ||
Sbjct 11970 TTTGCTTTGACGTTTTCGATAGTATCAGAAGCCTCCACTTCGAGTGTTATGGTTTTACCC 12029
Query 94982 GTAAGAGTTTTCACAAAGATCTGCAT 95007
|| | ||| || ||||| || |||||
Sbjct 12030 GTCAAAGTCTTTACAAAAATTTGCAT 12055
Score = 89.7 bits (98), Expect = 5e-13
Identities = 100/134 (75%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 94874 AAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACG 94933
||||| |||| ||||| ||||| ||||| || || ||||| | ||||| ||||| ||
Sbjct 12902 AAGATCAATCGCTGCTGGTCTGGTGGAATTCCCTCCTTGTCCTGGATTTTCGCCTTAACA 12961
Query 94934 GCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTC 94993
||| ||||||| || || || | ||||| ||||| ||||||||||||||
Sbjct 12962 TTCTCGATGGTGTCAGATGCTTCCACTTCCAATGTGATTGTTTTACCAGTAAGAGTTTTA 13021
Query 94994 ACAAAGATCTGCAT 95007
|||||||| |||||
Sbjct 13022 ACAAAGATTTGCAT 13035
Score = 82.4 bits (90), Expect = 7e-11
Identities = 96/130 (74%), Gaps = 0/130 (0%)
Strand=Plus/Plus
Query 94886 TGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTG 94945
||||| ||||| || ||||| || ||||| | |||||||| || || | | |||
Sbjct 13234 TGCTGGTCTGGCGGGATACCCTCCTTGTCTTGTATTTTTGCTTTAACATTTTCAATTGTG 13293
Query 94946 TCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGC 95005
|| | || || |||| ||||| || |||||||| || |||||||||||||| |||
Sbjct 13294 TCTGAAGCCTCCACCTCAAGAGTGATCGTCTTTCCAGTTAGCGTTTTCACAAAGATTTGC 13353
Query 95006 ATGCTTACAA 95015
||| ||||||
Sbjct 13354 ATGTTTACAA 13363
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 448262593417800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |