Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Wuchereria_20bancrofti_20[genbank_20GCA_5F001555675.1_202016-02-09] 5,105 sequences; 90,325,107 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq4574 105 6e-18 seq4130 100 3e-16 >seq4574 Length=39733 Score = 105 bits (116), Expect = 6e-18 Identities = 151/211 (72%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA--TCCT 94856 |||| ||||| || || ||||| || | ||||||||| || ||| || |||| Sbjct 20834 ACCAGGTGCAGCGTCGACTCCTTCTGAATATTATAATCGGACAA--TGTACGACCGTCCT 20891 Query 94857 CCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCAT 94916 ||||||| || || ||||||| | || ||||||||||| ||||| ||||| ||||| | Sbjct 20892 CCAGCTGCTTGCCCGCAAAGATCAGTCGCTGCTGATCTGGTGGAATGCCTTCCTTGTCCT 20951 Query 94917 AAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTT 94976 || ||||| |||||| ||| ||| |||| || || || | || ||||| | Sbjct 20952 GGATCTTTGCTTTGACGTTTTCGATAGTATCAGAAGCCTCCACTTCTAGTGTTATGGTCT 21011 Query 94977 TTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | || || | ||| || ||||| |||||||| Sbjct 21012 TACCCGTCAAAGTCTTTACAAAAATCTGCAT 21042 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 94874 AAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACG 94933 ||||| |||| ||||| ||||| ||||| || || ||||| | ||||||||||| || Sbjct 21890 AAGATCAATCGCTGCTGGTCTGGCGGAATTCCCTCCTTGTCCTGGATTTTTGCCTTAACA 21949 Query 94934 GCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTC 94993 ||| || |||| || || || | ||||| ||||| || ||||||||||| Sbjct 21950 TTCTCGATGGTATCAGATGCTTCCACTTCCAATGTGATTGTTTTACCGGTAAGAGTTTTA 22009 Query 94994 ACAAAGATCTGCAT 95007 |||||||| ||||| Sbjct 22010 ACAAAGATTTGCAT 22023 Score = 82.4 bits (90), Expect = 7e-11 Identities = 96/130 (74%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 94886 TGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTG 94945 ||||| ||||| || ||||| || ||||| | |||||||| || || | | ||| Sbjct 22226 TGCTGGTCTGGCGGGATACCCTCCTTGTCTTGTATTTTTGCTTTAACATTTTCAATTGTG 22285 Query 94946 TCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGC 95005 || | || || |||| ||||| ||||||||||| || |||||||| ||||| ||| Sbjct 22286 TCTGAAGCCTCCACTTCAAGAGTGATTGTTTTTCCAGTCAGTGTTTTCACGAAGATTTGC 22345 Query 95006 ATGCTTACAA 95015 ||| |||||| Sbjct 22346 ATGTTTACAA 22355 >seq4130 Length=21019 Score = 100 bits (110), Expect = 3e-16 Identities = 147/206 (71%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 94804 GTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA--TCCTCCAGC 94861 ||||| || || ||||| || | || |||||| || ||| || ||||||||| Sbjct 11852 GTGCAGCGTCGACTCCTTCTGAATATTGTAATCGGACAA--TGTACGACCGTCCTCCAGC 11909 Query 94862 TGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATT 94921 || || || ||||||| | || ||||||||||| ||||| ||||| ||||| | ||| Sbjct 11910 TGCTTGCCCGCAAAGATCAGTCGCTGCTGATCTGGTGGAATGCCTTCCTTGTCCTGGATT 11969 Query 94922 TTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCA 94981 ||||| |||||| ||| ||| |||| || || || | || |||||||| || Sbjct 11970 TTTGCTTTGACGTTTTCGATAGTATCAGAAGCCTCCACTTCGAGTGTTATGGTTTTACCC 12029 Query 94982 GTAAGAGTTTTCACAAAGATCTGCAT 95007 || | ||| || ||||| || ||||| Sbjct 12030 GTCAAAGTCTTTACAAAAATTTGCAT 12055 Score = 89.7 bits (98), Expect = 5e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 94874 AAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACG 94933 ||||| |||| ||||| ||||| ||||| || || ||||| | ||||| ||||| || Sbjct 12902 AAGATCAATCGCTGCTGGTCTGGTGGAATTCCCTCCTTGTCCTGGATTTTCGCCTTAACA 12961 Query 94934 GCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTC 94993 ||| ||||||| || || || | ||||| ||||| |||||||||||||| Sbjct 12962 TTCTCGATGGTGTCAGATGCTTCCACTTCCAATGTGATTGTTTTACCAGTAAGAGTTTTA 13021 Query 94994 ACAAAGATCTGCAT 95007 |||||||| ||||| Sbjct 13022 ACAAAGATTTGCAT 13035 Score = 82.4 bits (90), Expect = 7e-11 Identities = 96/130 (74%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 94886 TGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTG 94945 ||||| ||||| || ||||| || ||||| | |||||||| || || | | ||| Sbjct 13234 TGCTGGTCTGGCGGGATACCCTCCTTGTCTTGTATTTTTGCTTTAACATTTTCAATTGTG 13293 Query 94946 TCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGC 95005 || | || || |||| ||||| || |||||||| || |||||||||||||| ||| Sbjct 13294 TCTGAAGCCTCCACCTCAAGAGTGATCGTCTTTCCAGTTAGCGTTTTCACAAAGATTTGC 13353 Query 95006 ATGCTTACAA 95015 ||| |||||| Sbjct 13354 ATGTTTACAA 13363 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448262593417800