Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Wuchereria_20bancrofti_20[genbank_20GCA_5F001555675.1_202016-02-09] 5,105 sequences; 90,325,107 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq4584 192 9e-45 seq3443 192 9e-45 seq4953 93.3 7e-15 >seq4584 Length=40264 Score = 192 bits (212), Expect = 9e-45 Identities = 205/268 (76%), Gaps = 2/268 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||||||||| | | || || || ||||| |||||||| || || || ||||| Sbjct 17287 GCGAAGCGTCATCGTAAAGTGCTACGTGACAACATTCAAGGAATAACGAAACCGGCTATT 17346 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||| |||| || |||||||| || |||||| | || |||||| |||||||||| | Sbjct 17347 CGACGTTTGGCACGACGTGGTGGTGTAAAGCGTATTTCGGGATTGATCTATGAAGAAACA 17406 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCT-TTCCACTATACCGA 16611 |||| ||| ||||| | || | ||| ||||| | ||||||| || || ||| || Sbjct 17407 CGTGGTGTACTGAAGGTGTTTTTGGAGAATGTTATACGTGATGCTGTTACA-TATTGTGA 17465 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| ||||| ||||| ||||| | |||||| | |||||||| ||||||||||| || Sbjct 17466 GCACGCGAAACGAAAGACGGTCACAGCAATGGATGTTGTCTATGCGTTGAAACGTCAGGG 17525 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||| | | ||||||||||| ||||| Sbjct 17526 ACGTACGTTGTATGGTTTTGGTGGTTAA 17553 >seq3443 Length=10321 Score = 192 bits (212), Expect = 9e-45 Identities = 205/268 (76%), Gaps = 2/268 (1%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||||||||| | | || || || ||||| |||||||| || || || ||||| Sbjct 5745 GCGAAGCGTCATCGTAAAGTGCTACGTGACAACATTCAAGGAATAACGAAACCGGCTATT 5686 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||| |||| || |||||||| || |||||| | || |||||| |||||||||| | Sbjct 5685 CGACGTTTGGCACGACGTGGTGGTGTAAAGCGTATTTCGGGATTGATCTATGAAGAAACA 5626 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCT-TTCCACTATACCGA 16611 |||| ||| ||||| | || | ||| ||||| | ||||||| || || ||| || Sbjct 5625 CGTGGTGTACTGAAGGTGTTTTTGGAGAATGTTATACGTGATGCTGTTACA-TATTGTGA 5567 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| ||||| ||||| ||||| | |||||| | |||||||| ||||||||||| || Sbjct 5566 GCACGCGAAACGAAAGACGGTCACAGCAATGGATGTTGTCTATGCGTTGAAACGTCAGGG 5507 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||| | | ||||||||||| ||||| Sbjct 5506 ACGTACGTTGTATGGTTTTGGTGGTTAA 5479 >seq4953 Length=104668 Score = 93.3 bits (102), Expect = 7e-15 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||| ||||| | | ||| || |||||||| ||||| || || ||||| ||||| Sbjct 37486 CGCTAAGCGCCATCGAAAAGTTCTACGTGATAACATTCAAGGTATAACGAAGCCGGCTAT 37427 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||| |||| ||||||||||| || || || | || || | | |||||||| | Sbjct 37426 TCGTCGTTTGGCACGTCGTGGTGGCGTGAAACGAATTTCAGGTCTCATTTATGAAGAAAC 37367 Query 16552 TCGTGATGTTTTGAAG 16567 ||| || |||||| Sbjct 37366 GCGTAGCGTATTGAAG 37351 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79070532462765