Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Wuchereria_20bancrofti_20[genbank_20GCA_5F001555675.1_202016-02-09] 5,105 sequences; 90,325,107 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq5042 136 3e-27 seq4575 131 1e-25 seq4563 107 1e-18 seq4130 107 1e-18 seq4574 104 2e-17 seq5091 84.2 1e-11 seq4889 82.4 5e-11 >seq5042 Length=180356 Score = 136 bits (150), Expect = 3e-27 Identities = 87/95 (92%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 175180 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 175121 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||| ||||||||||||| Sbjct 175120 TAATCCATTCATGCGCGTCACGAATTAGATGACGA 175086 >seq4575 Length=39772 Score = 131 bits (144), Expect = 1e-25 Identities = 86/95 (91%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||| |||||||||||||||||||||||||||||||||| || |||||||| Sbjct 22307 AAGCCCGTTTCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 22366 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||| ||||||||||||| Sbjct 22367 TAATCCATTCATGCGCGTCACGAATTAGATGACGA 22401 >seq4563 Length=38996 Score = 107 bits (118), Expect = 1e-18 Identities = 74/84 (88%), Gaps = 5/84 (6%) Strand=Plus/Plus Query 25913 CTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGTTAATCCTTTCA 25967 ||||||||||||||||||||||||||||||||| || |||||||||||||| |||| Sbjct 32624 CTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCA 32683 Query 25968 TGCGCGTCACTAATTAGATGACGA 25991 ||||||||| ||||| ||||||| Sbjct 32684 TGCGCGTCATGAATTATATGACGA 32707 >seq4130 Length=21019 Score = 107 bits (118), Expect = 1e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 38126 CTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAA 38185 |||||| |||||||||||||| ||||| ||| |||| || | || || || ||||| Sbjct 11864 CTCCTTCTGAATATTGTAATCGGACAATGTACGACCGTCCTCCAGCTGCTTGCCCGCAAA 11923 Query 38186 TATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATT 38245 || || || || ||||| | || | |||||| |||||| |||||| || || || Sbjct 11924 GATCAGTCGCTGCTGATCTGGTGGAATGCCTTCCTTGTCCTGGATTTTTGCTTTGACGTT 11983 Query 38246 CTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCAC 38305 | || |||||| | || ||||| | ||| || |||||||||||||| || || || Sbjct 11984 TTCGATAGTATCAGAAGCCTCCACTTCGAGTGTTATGGTTTTACCCGTCAAAGTCTTTAC 12043 Query 38306 GAATATCTGCAT 38317 || || ||||| Sbjct 12044 AAAAATTTGCAT 12055 >seq4574 Length=39733 Score = 104 bits (114), Expect = 2e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 38126 CTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAA 38185 |||||| |||||||| ||||| ||||| ||| |||| || | || || || ||||| Sbjct 20851 CTCCTTCTGAATATTATAATCGGACAATGTACGACCGTCCTCCAGCTGCTTGCCCGCAAA 20910 Query 38186 TATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATT 38245 || || || || ||||| | || | |||||| |||||| || ||| || || || Sbjct 20911 GATCAGTCGCTGCTGATCTGGTGGAATGCCTTCCTTGTCCTGGATCTTTGCTTTGACGTT 20970 Query 38246 CTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCAC 38305 | || |||||| | || ||||||| ||| || || ||||||||||| || || || Sbjct 20971 TTCGATAGTATCAGAAGCCTCCACTTCTAGTGTTATGGTCTTACCCGTCAAAGTCTTTAC 21030 Query 38306 GAATATCTGCAT 38317 || |||||||| Sbjct 21031 AAAAATCTGCAT 21042 Score = 84.2 bits (92), Expect = 1e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 38175 TTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTT 38234 || || ||||| || ||||| || ||||| | || | |||||||| ||| ||| || Sbjct 21535 TTACCAGCAAAAATGAGGCGCTGCTGATCCGGAGGAATCCCTTCTTTATCCTGAATCTTG 21594 Query 38235 TGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTC 38294 ||||||||| | || ||||| | ||||||||||| || || || || |||||| Sbjct 21595 GCCTTCACATTTTCGATTGTATCAGAAGCCTCAACTTCTAAGGTGATCGTCTTGCCCGTC 21654 Query 38295 AAGGTTTTCACGAATATCTGCATG 38318 || ||||| || || || |||||| Sbjct 21655 AATGTTTTTACAAAAATTTGCATG 21678 >seq5091 Length=321914 Score = 84.2 bits (92), Expect = 1e-11 Identities = 60/69 (87%), Gaps = 5/69 (7%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||| |||||||||||||||||||||| ||||||||| || |||||||| Sbjct 52987 AAGCCCGTTCCTTTGGCTGTGGTTTCGCTAGATAATAGATAGGGACAGTGGCAATCTCGT 52928 Query 25957 TAATCCTTT 25965 |||||| || Sbjct 52927 TAATCCATT 52919 >seq4889 Length=84333 Score = 82.4 bits (90), Expect = 5e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 19951 CTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGCGGTA 20010 |||| ||||||||||| |||||| |||| | ||||||||| ||||||||||||| ||| Sbjct 60381 CTCTCCAAAGTTCTTTGCAACTTCCCCTTATAGTACTTGTTTGCTATCGGTCTCGTGGTC 60440 Query 20011 ATATTTAGCCTTA 20023 |||||||| ||| Sbjct 60441 GTATTTAGCTTTA 60453 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334926360527255