Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Wuchereria_20bancrofti_20[genbank_20GCA_5F001555675.1_202016-02-09]
5,105 sequences; 90,325,107 total letters
Query= NC_008293.1
Length=135454
Score E
Sequences producing significant alignments: (Bits) Value
seq4130 165 7e-36
seq4574 141 8e-29
>seq4130
Length=21019
Score = 165 bits (182), Expect = 7e-36
Identities = 168/217 (77%), Gaps = 8/217 (4%)
Strand=Plus/Minus
Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057
||||||||| ||||||||||||||||| |||||| |||| ||| ||||||||||| | ||
Sbjct 12056 AATGCAAATTTTTGTAAAGACTTTGACGGGTAAAACCATAACACTCGAAGTGGAGGCTTC 11997
Query 25058 TGACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTG 25113
||| |||||||| |||| ||||||||| || ||||| ||||| |||||||| |
Sbjct 11996 TGATACTATCGAAAACGTCA---AAGCAAAAATCCAG-GACAAGGAAGGCATTCCACCAG 11941
Query 25114 ACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATT 25173
| || ||||| | || ||||| ||||| || | || || | ||| || || |||||
Sbjct 11940 ATCAGCAGCGACTGATCTTTGCGGGCAAGCAGCTGGAGGACGGTCGTACATTGTCCGATT 11881
Query 25174 ACAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
|||||||||| || || || ||||| || |||| ||
Sbjct 11880 ACAATATTCAGAAGGAGTCGACGCTGCACCTAGTTCT 11844
Score = 86.0 bits (94), Expect = 5e-12
Identities = 107/144 (74%), Gaps = 2/144 (1%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
|||||||| |||||||| || ||||| || || | ||||| | ||||| ||| | |||
Sbjct 12690 ATGCAAATTTTTGTAAAAACATTGACGGGCAAGACGATCACCTTAGAAGTTGAGGCTTCT 12631
Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117
||||| ||||| | ||| | || | ||| || ||||||||||| || || || ||
Sbjct 12630 GACACAATCGAAAATGTAAAGGCCAAGATTCAG-GATAAAGAAGGGATCCCTCCGGATCA 12572
Query 25118 ACAGCGGATTATTTTTGCCGGCAA 25141
||||| |||||||||| || ||
Sbjct 12571 GCAGCGCCTTATTTTTGCTGGTAA 12548
>seq4574
Length=39733
Score = 141 bits (156), Expect = 8e-29
Identities = 161/214 (75%), Gaps = 8/214 (4%)
Strand=Plus/Minus
Query 24992 CGGAACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGA 25051
|||| |||||| || ||||||||||||||||| ||||| |||| ||| | ||||||||
Sbjct 21049 CGGAGGAATGCAGATTTTTGTAAAGACTTTGACGGGTAAGACCATAACACTAGAAGTGGA 20990
Query 25052 GTCGTCTGACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTC 25107
| | ||||| |||||||| |||| |||| ||| ||| ||||| ||||| ||||
Sbjct 20989 GGCTTCTGATACTATCGAAAACGTCA---AAGC-AAAGATCCAGGACAAGGAAGGCATTC 20934
Query 25108 CACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGG 25167
|||| || || ||||| | || ||||| ||||| || | || || | ||| || ||
Sbjct 20933 CACCAGATCAGCAGCGACTGATCTTTGCGGGCAAGCAGCTGGAGGACGGTCGTACATTGT 20874
Query 25168 GCGATTACAATATTCAAAAAGAATCCACGCTACA 25201
|||||| |||||||| || || || ||||| ||
Sbjct 20873 CCGATTATAATATTCAGAAGGAGTCGACGCTGCA 20840
Score = 86.0 bits (94), Expect = 5e-12
Identities = 107/144 (74%), Gaps = 2/144 (1%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
|||||||| |||||||| || ||||| || || | ||||| | ||||| ||| | |||
Sbjct 21677 ATGCAAATTTTTGTAAAAACATTGACGGGCAAGACGATCACCTTAGAAGTTGAGGCTTCT 21618
Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117
|| || ||||| ||||| | || | ||| || |||||||||||||| || || ||
Sbjct 21617 GATACAATCGAAAATGTGAAGGCCAAGATTCAG-GATAAAGAAGGGATTCCTCCGGATCA 21559
Query 25118 ACAGCGGATTATTTTTGCCGGCAA 25141
||||| | |||||||| || ||
Sbjct 21558 GCAGCGCCTCATTTTTGCTGGTAA 21535
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433301039550575
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |