Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Wuchereria_20bancrofti_20[genbank_20GCA_5F001555675.1_202016-02-09] 5,105 sequences; 90,325,107 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq4130 165 7e-36 seq4574 141 8e-29 >seq4130 Length=21019 Score = 165 bits (182), Expect = 7e-36 Identities = 168/217 (77%), Gaps = 8/217 (4%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| ||||||||||||||||| |||||| |||| ||| ||||||||||| | || Sbjct 12056 AATGCAAATTTTTGTAAAGACTTTGACGGGTAAAACCATAACACTCGAAGTGGAGGCTTC 11997 Query 25058 TGACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTG 25113 ||| |||||||| |||| ||||||||| || ||||| ||||| |||||||| | Sbjct 11996 TGATACTATCGAAAACGTCA---AAGCAAAAATCCAG-GACAAGGAAGGCATTCCACCAG 11941 Query 25114 ACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATT 25173 | || ||||| | || ||||| ||||| || | || || | ||| || || ||||| Sbjct 11940 ATCAGCAGCGACTGATCTTTGCGGGCAAGCAGCTGGAGGACGGTCGTACATTGTCCGATT 11881 Query 25174 ACAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 |||||||||| || || || ||||| || |||| || Sbjct 11880 ACAATATTCAGAAGGAGTCGACGCTGCACCTAGTTCT 11844 Score = 86.0 bits (94), Expect = 5e-12 Identities = 107/144 (74%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| |||||||| || ||||| || || | ||||| | ||||| ||| | ||| Sbjct 12690 ATGCAAATTTTTGTAAAAACATTGACGGGCAAGACGATCACCTTAGAAGTTGAGGCTTCT 12631 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| ||||| | ||| | || | ||| || ||||||||||| || || || || Sbjct 12630 GACACAATCGAAAATGTAAAGGCCAAGATTCAG-GATAAAGAAGGGATCCCTCCGGATCA 12572 Query 25118 ACAGCGGATTATTTTTGCCGGCAA 25141 ||||| |||||||||| || || Sbjct 12571 GCAGCGCCTTATTTTTGCTGGTAA 12548 >seq4574 Length=39733 Score = 141 bits (156), Expect = 8e-29 Identities = 161/214 (75%), Gaps = 8/214 (4%) Strand=Plus/Minus Query 24992 CGGAACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGA 25051 |||| |||||| || ||||||||||||||||| ||||| |||| ||| | |||||||| Sbjct 21049 CGGAGGAATGCAGATTTTTGTAAAGACTTTGACGGGTAAGACCATAACACTAGAAGTGGA 20990 Query 25052 GTCGTCTGACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTC 25107 | | ||||| |||||||| |||| |||| ||| ||| ||||| ||||| |||| Sbjct 20989 GGCTTCTGATACTATCGAAAACGTCA---AAGC-AAAGATCCAGGACAAGGAAGGCATTC 20934 Query 25108 CACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGG 25167 |||| || || ||||| | || ||||| ||||| || | || || | ||| || || Sbjct 20933 CACCAGATCAGCAGCGACTGATCTTTGCGGGCAAGCAGCTGGAGGACGGTCGTACATTGT 20874 Query 25168 GCGATTACAATATTCAAAAAGAATCCACGCTACA 25201 |||||| |||||||| || || || ||||| || Sbjct 20873 CCGATTATAATATTCAGAAGGAGTCGACGCTGCA 20840 Score = 86.0 bits (94), Expect = 5e-12 Identities = 107/144 (74%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| |||||||| || ||||| || || | ||||| | ||||| ||| | ||| Sbjct 21677 ATGCAAATTTTTGTAAAAACATTGACGGGCAAGACGATCACCTTAGAAGTTGAGGCTTCT 21618 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || ||||| ||||| | || | ||| || |||||||||||||| || || || Sbjct 21617 GATACAATCGAAAATGTGAAGGCCAAGATTCAG-GATAAAGAAGGGATTCCTCCGGATCA 21559 Query 25118 ACAGCGGATTATTTTTGCCGGCAA 25141 ||||| | |||||||| || || Sbjct 21558 GCAGCGCCTCATTTTTGCTGGTAA 21535 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433301039550575