Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Wuchereria_20bancrofti_20[genbank_20GCA_5F001555675.1_202016-02-09] 5,105 sequences; 90,325,107 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq4130 131 1e-25 seq4330 109 5e-19 seq4574 105 6e-18 seq4209 91.5 1e-13 seq3175 91.5 1e-13 seq3627 82.4 6e-11 >seq4130 Length=21019 Score = 131 bits (144), Expect = 1e-25 Identities = 155/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||||||||| || ||||| || |||||||| | || || |||||||| | | Sbjct 12055 ATGCAAATTTTTGTAAAGACTTTGACGGGTAAAACCATAACACTCGAAGTGGAGGCTTCT 11996 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || | ||||| |||||| || |||||||| || |||||||| ||||| Sbjct 11995 GATACTATCGAAAACGTCAAAGCAAAAATCCAGGACAAGGAAGGCATTCCACCAGATCAG 11936 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || ||||| ||||| ||| | ||||| || || | ||||||||||| Sbjct 11935 CAGCGACTGATCTTTGCGGGCAAGCAGCTGGAGGACGGTCGTACATTGTCCGATTACAAT 11876 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTT 22428 ||||| || || || || | || ||||| Sbjct 11875 ATTCAGAAGGAGTCGACGCTGCACCTAGTT 11846 Score = 109 bits (120), Expect = 5e-19 Identities = 113/148 (76%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 22211 TTGTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGG 22270 ||||||| |||||||| ||||| ||||| |||| || || ||| |||||||||| |||| Sbjct 13363 TTGTAAACATGCAAATCTTTGTGAAAACGCTAACTGGAAAGACGATCACTCTTGAGGTGG 13304 Query 22271 AAACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCAC 22330 | | | || || | || || | ||| |||||| ||||||||||||||||| || | Sbjct 13303 AGGCTTCAGACACAATTGAAAATGTTAAAGCAAAAATACAAGACAAGGAGGGTATCCCGC 13244 Query 22331 CCGATCAACAACGTCTTATATTTGCCGG 22358 | || || || || ||||| ||||| || Sbjct 13243 CAGACCAGCAGCGCCTTATTTTTGCAGG 13216 Score = 86.0 bits (94), Expect = 5e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| |||||||||||| | || |||||||| |||| | ||||||||| | | Sbjct 13035 ATGCAAATCTTTGTTAAAACTCTTACTGGTAAAACAATCACATTGGAAGTGGAAGCATCT 12976 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || | || ||||| || ||||||||||| |||||||| || || Sbjct 12975 GACACCATCGAGAATGTTAAGGCGAAAATCCAGGACAAGGAGGGAATTCCACCAGACCAG 12916 Query 22339 CAACG 22343 || || Sbjct 12915 CAGCG 12911 >seq4330 Length=27005 Score = 109 bits (120), Expect = 5e-19 Identities = 110/143 (77%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 |||||||| || ||||| ||||| ||||| || || ||| | || ||||| || ||| | Sbjct 21132 AAGATGCAGATATTTGTGAAAACGTTAACTGGAAAGACGATTACCCTTGAGGTAGAATCG 21191 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 ||||||| | || || | || |||||||| || ||||||||||||||||| ||| Sbjct 21192 TCCGATACTATTGAGAATGTGAAGACTAAAATTCAGGATAAGGAGGGTATTCCACCTGAT 21251 Query 22336 CAACAACGTCTTATATTTGCCGG 22358 || ||||| ||||| ||||| || Sbjct 21252 CAGCAACGACTTATTTTTGCAGG 21274 >seq4574 Length=39733 Score = 105 bits (116), Expect = 6e-18 Identities = 112/148 (76%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 22211 TTGTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGG 22270 ||||||| |||||||| || || ||||| | || || ||||| ||||||||||||||| Sbjct 22355 TTGTAAACATGCAAATCTTCGTGAAAACACTGACTGGAAAAACAATCACTCTTGAAGTGG 22296 Query 22271 AAACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCAC 22330 | | | || || | || || | ||| |||||| ||||||||||||||||| || | Sbjct 22295 AGGCTTCAGACACAATTGAAAATGTTAAAGCAAAAATACAAGACAAGGAGGGTATCCCGC 22236 Query 22331 CCGATCAACAACGTCTTATATTTGCCGG 22358 | || || || || ||||| ||||| || Sbjct 22235 CAGACCAGCAGCGCCTTATTTTTGCAGG 22208 Score = 95.1 bits (104), Expect = 1e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| |||||||||||| | ||||||||||| |||| | ||||||||| | | Sbjct 22023 ATGCAAATCTTTGTTAAAACTCTTACCGGTAAAACAATCACATTGGAAGTGGAAGCATCT 21964 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || || | || |||||| || ||||||||||| ||||| || || || Sbjct 21963 GATACCATCGAGAATGTTAAGGCAAAAATCCAGGACAAGGAGGGAATTCCGCCAGACCAG 21904 Query 22339 CAACG 22343 || || Sbjct 21903 CAGCG 21899 >seq4209 Length=23298 Score = 91.5 bits (100), Expect = 1e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||||||||| || |||||||| ||||||||| | || ||||| || ||| || | Sbjct 2669 ATGCAAATTTTTGTCAAGACTTTAACTGGTAAAACGATTACGCTTGAGGTCGAATCCTCG 2610 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || | ||| ||||| || ||||| || || || || || ||||| Sbjct 2609 GATACAATTGAGAATGTAAAAGCGAAAATACAGGACAAAGAAGGCATACCCCCAGATCAG 2550 Query 22339 CAACGTCTTATATTTGCCGG 22358 || || | || ||||| || Sbjct 2549 CAGCGGTTGATTTTTGCAGG 2530 >seq3175 Length=8402 Score = 91.5 bits (100), Expect = 1e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||||||||| || |||||||| ||||||||| | || ||||| || ||| || | Sbjct 5113 ATGCAAATTTTTGTCAAGACTTTAACTGGTAAAACGATTACGCTTGAGGTCGAATCCTCG 5172 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || | ||| ||||| || ||||| || || || || || ||||| Sbjct 5173 GATACAATTGAGAATGTAAAAGCGAAAATACAGGACAAAGAAGGCATACCCCCAGATCAG 5232 Query 22339 CAACGTCTTATATTTGCCGG 22358 || || | || ||||| || Sbjct 5233 CAGCGGTTGATTTTTGCAGG 5252 >seq3627 Length=12487 Score = 82.4 bits (90), Expect = 6e-11 Identities = 53/58 (91%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 51106 TACCATATTGGACAATTAAAAATACTTGGGGCGAGGATTGGGGCGAAAATGGATATTT 51163 |||||||||||||||||||||||| |||||| ||||| ||||| |||||||| ||||| Sbjct 6908 TACCATATTGGACAATTAAAAATAGTTGGGGTGAGGAATGGGGTGAAAATGGTTATTT 6851 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419701885704325