Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Wuchereria_20bancrofti_20[genbank_20GCA_5F001555675.1_202016-02-09]
5,105 sequences; 90,325,107 total letters
Query= NC_008586.1
Length=131204
Score E
Sequences producing significant alignments: (Bits) Value
seq4130 131 1e-25
seq4330 109 5e-19
seq4574 105 6e-18
seq4209 91.5 1e-13
seq3175 91.5 1e-13
seq3627 82.4 6e-11
>seq4130
Length=21019
Score = 131 bits (144), Expect = 1e-25
Identities = 155/210 (74%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
|||||||||||||| || ||||| || |||||||| | || || |||||||| | |
Sbjct 12055 ATGCAAATTTTTGTAAAGACTTTGACGGGTAAAACCATAACACTCGAAGTGGAGGCTTCT 11996
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
||||| | || | ||||| |||||| || |||||||| || |||||||| |||||
Sbjct 11995 GATACTATCGAAAACGTCAAAGCAAAAATCCAGGACAAGGAAGGCATTCCACCAGATCAG 11936
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| || || || ||||| ||||| ||| | ||||| || || | |||||||||||
Sbjct 11935 CAGCGACTGATCTTTGCGGGCAAGCAGCTGGAGGACGGTCGTACATTGTCCGATTACAAT 11876
Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTT 22428
||||| || || || || | || |||||
Sbjct 11875 ATTCAGAAGGAGTCGACGCTGCACCTAGTT 11846
Score = 109 bits (120), Expect = 5e-19
Identities = 113/148 (76%), Gaps = 0/148 (0%)
Strand=Plus/Minus
Query 22211 TTGTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGG 22270
||||||| |||||||| ||||| ||||| |||| || || ||| |||||||||| ||||
Sbjct 13363 TTGTAAACATGCAAATCTTTGTGAAAACGCTAACTGGAAAGACGATCACTCTTGAGGTGG 13304
Query 22271 AAACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCAC 22330
| | | || || | || || | ||| |||||| ||||||||||||||||| || |
Sbjct 13303 AGGCTTCAGACACAATTGAAAATGTTAAAGCAAAAATACAAGACAAGGAGGGTATCCCGC 13244
Query 22331 CCGATCAACAACGTCTTATATTTGCCGG 22358
| || || || || ||||| ||||| ||
Sbjct 13243 CAGACCAGCAGCGCCTTATTTTTGCAGG 13216
Score = 86.0 bits (94), Expect = 5e-12
Identities = 94/125 (75%), Gaps = 0/125 (0%)
Strand=Plus/Minus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
|||||||| |||||||||||| | || |||||||| |||| | ||||||||| | |
Sbjct 13035 ATGCAAATCTTTGTTAAAACTCTTACTGGTAAAACAATCACATTGGAAGTGGAAGCATCT 12976
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| ||| | || || | || ||||| || ||||||||||| |||||||| || ||
Sbjct 12975 GACACCATCGAGAATGTTAAGGCGAAAATCCAGGACAAGGAGGGAATTCCACCAGACCAG 12916
Query 22339 CAACG 22343
|| ||
Sbjct 12915 CAGCG 12911
>seq4330
Length=27005
Score = 109 bits (120), Expect = 5e-19
Identities = 110/143 (77%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275
|||||||| || ||||| ||||| ||||| || || ||| | || ||||| || ||| |
Sbjct 21132 AAGATGCAGATATTTGTGAAAACGTTAACTGGAAAGACGATTACCCTTGAGGTAGAATCG 21191
Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335
||||||| | || || | || |||||||| || ||||||||||||||||| |||
Sbjct 21192 TCCGATACTATTGAGAATGTGAAGACTAAAATTCAGGATAAGGAGGGTATTCCACCTGAT 21251
Query 22336 CAACAACGTCTTATATTTGCCGG 22358
|| ||||| ||||| ||||| ||
Sbjct 21252 CAGCAACGACTTATTTTTGCAGG 21274
>seq4574
Length=39733
Score = 105 bits (116), Expect = 6e-18
Identities = 112/148 (76%), Gaps = 0/148 (0%)
Strand=Plus/Minus
Query 22211 TTGTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGG 22270
||||||| |||||||| || || ||||| | || || ||||| |||||||||||||||
Sbjct 22355 TTGTAAACATGCAAATCTTCGTGAAAACACTGACTGGAAAAACAATCACTCTTGAAGTGG 22296
Query 22271 AAACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCAC 22330
| | | || || | || || | ||| |||||| ||||||||||||||||| || |
Sbjct 22295 AGGCTTCAGACACAATTGAAAATGTTAAAGCAAAAATACAAGACAAGGAGGGTATCCCGC 22236
Query 22331 CCGATCAACAACGTCTTATATTTGCCGG 22358
| || || || || ||||| ||||| ||
Sbjct 22235 CAGACCAGCAGCGCCTTATTTTTGCAGG 22208
Score = 95.1 bits (104), Expect = 1e-14
Identities = 96/125 (77%), Gaps = 0/125 (0%)
Strand=Plus/Minus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
|||||||| |||||||||||| | ||||||||||| |||| | ||||||||| | |
Sbjct 22023 ATGCAAATCTTTGTTAAAACTCTTACCGGTAAAACAATCACATTGGAAGTGGAAGCATCT 21964
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|||||| | || || | || |||||| || ||||||||||| ||||| || || ||
Sbjct 21963 GATACCATCGAGAATGTTAAGGCAAAAATCCAGGACAAGGAGGGAATTCCGCCAGACCAG 21904
Query 22339 CAACG 22343
|| ||
Sbjct 21903 CAGCG 21899
>seq4209
Length=23298
Score = 91.5 bits (100), Expect = 1e-13
Identities = 104/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
|||||||||||||| || |||||||| ||||||||| | || ||||| || ||| || |
Sbjct 2669 ATGCAAATTTTTGTCAAGACTTTAACTGGTAAAACGATTACGCTTGAGGTCGAATCCTCG 2610
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
||||| | || || | ||| ||||| || ||||| || || || || || |||||
Sbjct 2609 GATACAATTGAGAATGTAAAAGCGAAAATACAGGACAAAGAAGGCATACCCCCAGATCAG 2550
Query 22339 CAACGTCTTATATTTGCCGG 22358
|| || | || ||||| ||
Sbjct 2549 CAGCGGTTGATTTTTGCAGG 2530
>seq3175
Length=8402
Score = 91.5 bits (100), Expect = 1e-13
Identities = 104/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
|||||||||||||| || |||||||| ||||||||| | || ||||| || ||| || |
Sbjct 5113 ATGCAAATTTTTGTCAAGACTTTAACTGGTAAAACGATTACGCTTGAGGTCGAATCCTCG 5172
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
||||| | || || | ||| ||||| || ||||| || || || || || |||||
Sbjct 5173 GATACAATTGAGAATGTAAAAGCGAAAATACAGGACAAAGAAGGCATACCCCCAGATCAG 5232
Query 22339 CAACGTCTTATATTTGCCGG 22358
|| || | || ||||| ||
Sbjct 5233 CAGCGGTTGATTTTTGCAGG 5252
>seq3627
Length=12487
Score = 82.4 bits (90), Expect = 6e-11
Identities = 53/58 (91%), Gaps = 0/58 (0%)
Strand=Plus/Minus
Query 51106 TACCATATTGGACAATTAAAAATACTTGGGGCGAGGATTGGGGCGAAAATGGATATTT 51163
|||||||||||||||||||||||| |||||| ||||| ||||| |||||||| |||||
Sbjct 6908 TACCATATTGGACAATTAAAAATAGTTGGGGTGAGGAATGGGGTGAAAATGGTTATTT 6851
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 419701885704325
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |