Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Wuchereria_20bancrofti_20[genbank_20GCA_5F001555675.1_202016-02-09] 5,105 sequences; 90,325,107 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq4574 156 8e-33 seq4130 143 5e-29 seq4925 86.0 1e-11 seq4769 86.0 1e-11 seq3151 86.0 1e-11 >seq4574 Length=39733 Score = 156 bits (172), Expect = 8e-33 Identities = 172/229 (75%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 68234 TCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGA 68293 ||| || |||||||| | |||| ||| ||||| ||||| || || || ||||||||||| Sbjct 20815 TCCACCACGAAGGCGAAGAACCAGGTGCAGCGTCGACTCCTTCTGAATATTATAATCGGA 20874 Query 68294 GAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGG 68353 | ||| | || || || | |||||| || || || || |||| || || || ||||| Sbjct 20875 CAATGTACGACCGTCCTCCAGCTGCTTGCCCGCAAAGATCAGTCGCTGCTGATCTGGTGG 20934 Query 68354 AATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTAC 68413 ||||||||||||||| || |||||||| |||||| ||||| || || | | || || Sbjct 20935 AATGCCTTCCTTGTCCTGGATCTTTGCTTTGACGTTTTCGATAGTATCAGAAGCCTCCAC 20994 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 ||| | || ||||| || ||||| | ||||| || || ||||||||| Sbjct 20995 TTCTAGTGTTATGGTCTTACCCGTCAAAGTCTTTACAAAAATCTGCATT 21043 >seq4130 Length=21019 Score = 143 bits (158), Expect = 5e-29 Identities = 169/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 68234 TCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGA 68293 ||| || |||||||| | || | ||| ||||| ||||| || || || || |||||||| Sbjct 11828 TCCACCACGAAGGCGAAGAACTAGGTGCAGCGTCGACTCCTTCTGAATATTGTAATCGGA 11887 Query 68294 GAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGG 68353 | ||| | || || || | |||||| || || || || |||| || || || ||||| Sbjct 11888 CAATGTACGACCGTCCTCCAGCTGCTTGCCCGCAAAGATCAGTCGCTGCTGATCTGGTGG 11947 Query 68354 AATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTAC 68413 ||||||||||||||| || || ||||| |||||| ||||| || || | | || || Sbjct 11948 AATGCCTTCCTTGTCCTGGATTTTTGCTTTGACGTTTTCGATAGTATCAGAAGCCTCCAC 12007 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 ||| | || |||||||| ||||| | ||||| || || || |||||| Sbjct 12008 TTCGAGTGTTATGGTTTTACCCGTCAAAGTCTTTACAAAAATTTGCATT 12056 Score = 104 bits (114), Expect = 4e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381 || ||||| || | || || ||||| |||||||| || |||||||| || || || ||| Sbjct 12896 CCCGCGAAGATCAATCGCTGCTGGTCTGGTGGAATTCCCTCCTTGTCCTGGATTTTCGCC 12955 Query 68382 TTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGG 68441 || || |||||||||||| | || ||| |||||||| ||||| ||||| || || || Sbjct 12956 TTAACATTCTCGATGGTGTCAGATGCTTCCACTTCCAATGTGATTGTTTTACCAGTAAGA 13015 Query 68442 GTCTTGACGAATATCTGCAT 68461 || || || || || ||||| Sbjct 13016 GTTTTAACAAAGATTTGCAT 13035 >seq4925 Length=96297 Score = 86.0 bits (94), Expect = 1e-11 Identities = 70/85 (82%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 84443 GGGTGACGAGAGCGCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGT 84502 |||||| | | ||||||||||||||||||| ||||| | || ||||||| || | || Sbjct 94889 GGGTGATTGGTGGGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGT 94830 Query 84503 CGTGGGTTCGAGCCCCACATCGGGC 84527 || ||||||||||||| |||||||| Sbjct 94829 CGCGGGTTCGAGCCCCGCATCGGGC 94805 >seq4769 Length=58795 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 ||||||||||||||||||| ||||| | || ||||||| || | |||| |||||||||| Sbjct 27208 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAGC 27267 Query 84516 CCCACATCGGGC 84527 ||| |||||||| Sbjct 27268 CCCGCATCGGGC 27279 >seq3151 Length=8283 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 ||||||||||||||||||| ||||| | || ||||||| || | |||| |||||||||| Sbjct 2884 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAGC 2825 Query 84516 CCCACATCGGGC 84527 ||| |||||||| Sbjct 2824 CCCGCATCGGGC 2813 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921563588970600