Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Wuchereria_20bancrofti_20[genbank_20GCA_5F001555675.1_202016-02-09] 5,105 sequences; 90,325,107 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq4130 105 5e-18 seq4574 87.8 1e-12 >seq4130 Length=21019 Score = 105 bits (116), Expect = 5e-18 Identities = 157/220 (71%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || || || || || || ||||| |||||||||||| |||||||| | |||| || Sbjct 11838 AGGCGAAGAACTAGGTGCAGCGTCGACTCCTTCTGAATATTGTAATCGGACAATGTACGA 11897 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 |||| |||| |||||||| ||||| ||||| ||||||||||| || | || || Sbjct 11898 CCGTCCTCCAGCTGCTTGCCCGCAAAGATCAGTCGCTGCTGATCTGGTGGAATGCCTTCC 11957 Query 34030 TTGTCCATAATTTTTTGCTTAATGGAACTC-ACACTATCAGTAGATTCGCATTCGACCGT 34088 |||||| | ||||||||| | || | | |||||| || || ||||| || Sbjct 11958 TTGTCC-TGGATTTTTGCTTTGACGTTTTCGATAGTATCAGAAGCCTCCACTTCGAGTGT 12016 Query 34089 TATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATT 34128 ||| ||||| || || | || || ||||| ||||||||| Sbjct 12017 TATGGTTTTACCCGTCAAAGTCTTTACAAAAATTTGCATT 12056 >seq4574 Length=39733 Score = 87.8 bits (96), Expect = 1e-12 Identities = 153/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || || || ||||| || ||||| |||||||||||| || ||||| | |||| || Sbjct 20825 AGGCGAAGAACCAGGTGCAGCGTCGACTCCTTCTGAATATTATAATCGGACAATGTACGA 20884 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 |||| |||| |||||||| ||||| ||||| ||||||||||| || | || || Sbjct 20885 CCGTCCTCCAGCTGCTTGCCCGCAAAGATCAGTCGCTGCTGATCTGGTGGAATGCCTTCC 20944 Query 34030 TTGTCCATAATTTTTTGCTTAATGGAACTC-ACACTATCAGTAGATTCGCATTCGACCGT 34088 |||||| | | ||||||| | || | | |||||| || || ||| | || Sbjct 20945 TTGTCC-TGGATCTTTGCTTTGACGTTTTCGATAGTATCAGAAGCCTCCACTTCTAGTGT 21003 Query 34089 TATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATT 34128 ||| || || || || | || || ||||| || |||||| Sbjct 21004 TATGGTCTTACCCGTCAAAGTCTTTACAAAAATCTGCATT 21043 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397037695894210