Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Wuchereria_20bancrofti_20[genbank_20GCA_5F001555675.1_202016-02-09]
5,105 sequences; 90,325,107 total letters
Query= NC_009898.1
Length=368683
Score E
Sequences producing significant alignments: (Bits) Value
seq4130 120 7e-22
seq4209 93.3 1e-13
seq3175 93.3 1e-13
seq4330 91.5 3e-13
>seq4130
Length=21019
Score = 120 bits (132), Expect = 7e-22
Identities = 164/229 (72%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305
|||||| || || | ||| || || || | ||| || || || ||||| || ||||
Sbjct 11828 TCCACCACGAAGGCGAAGAACTAGGTGCAGCGTCGACTCCTTCTGAATATTGTAATCGGA 11887
Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365
| || || ||||| || | || || || || |||||||| ||||| ||| |||
Sbjct 11888 CAATGTACGACCGTCCTCCAGCTGCTTGCCCGCAAAGATCAGTCGCTGCTGATCTGGTGG 11947
Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425
|| ||||| || ||||||||||| ||||| |||||||| |||| ||| | || ||
Sbjct 11948 AATGCCTTCCTTGTCCTGGATTTTTGCTTTGACGTTTTCGATAGTATCAGAAGCCTCCAC 12007
Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474
|||||| || || || || || |||| |||||| || || || ||||||
Sbjct 12008 TTCGAGTGTTATGGTTTTACCCGTCAAAGTCTTTACAAAAATTTGCATT 12056
>seq4209
Length=23298
Score = 93.3 bits (102), Expect = 1e-13
Identities = 107/143 (75%), Gaps = 6/143 (4%)
Strand=Plus/Plus
Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTC 288390
||||| || |||| ||||| ||| |||||| || |||||||| ||||| ||||||
Sbjct 2530 CCTGCAAAAATCAACCGCTGCTGA---TCTGGGGGTATGCCTTCTTTGTCCTGTATTTTC 2586
Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450
||||| || || || || | ||| ||||| || || ||||| ||||| || || ||
Sbjct 2587 GCTTTTACATTCTCAATTGTATCCGAGGATTCGACCTCAAGCGTAATCGTTTTACCAGTT 2646
Query 288451 AGAGTCTTGACGAATATCTGCAT 288473
| ||||||||| || || |||||
Sbjct 2647 AAAGTCTTGACAAAAATTTGCAT 2669
>seq3175
Length=8402
Score = 93.3 bits (102), Expect = 1e-13
Identities = 107/143 (75%), Gaps = 6/143 (4%)
Strand=Plus/Minus
Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTC 288390
||||| || |||| ||||| ||| |||||| || |||||||| ||||| ||||||
Sbjct 5252 CCTGCAAAAATCAACCGCTGCTGA---TCTGGGGGTATGCCTTCTTTGTCCTGTATTTTC 5196
Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450
||||| || || || || | ||| ||||| || || ||||| ||||| || || ||
Sbjct 5195 GCTTTTACATTCTCAATTGTATCCGAGGATTCGACCTCAAGCGTAATCGTTTTACCAGTT 5136
Query 288451 AGAGTCTTGACGAATATCTGCAT 288473
| ||||||||| || || |||||
Sbjct 5135 AAAGTCTTGACAAAAATTTGCAT 5113
>seq4330
Length=27005
Score = 91.5 bits (100), Expect = 3e-13
Identities = 104/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393
||||| || || || || || ||| | ||| || || || |||||||| ||||| |
Sbjct 21274 CCTGCAAAAATAAGTCGTTGCTGATCAGGTGGAATACCCTCCTTATCCTGAATTTTAGTC 21215
Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453
||||| || || |||| |||| ||||||||| || || || |||||||| || || |
Sbjct 21214 TTCACATTCTCAATAGTATCGGACGATTCTACCTCAAGGGTAATCGTCTTTCCAGTTAAC 21155
Query 288454 GTCTTGACGAATATCTGCAT 288473
|| || || |||||||||||
Sbjct 21154 GTTTTCACAAATATCTGCAT 21135
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1179577241386190
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |