Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Wuchereria_20bancrofti_20[genbank_20GCA_5F001555675.1_202016-02-09] 5,105 sequences; 90,325,107 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq4130 120 7e-22 seq4209 93.3 1e-13 seq3175 93.3 1e-13 seq4330 91.5 3e-13 >seq4130 Length=21019 Score = 120 bits (132), Expect = 7e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||| || || | ||| || || || | ||| || || || ||||| || |||| Sbjct 11828 TCCACCACGAAGGCGAAGAACTAGGTGCAGCGTCGACTCCTTCTGAATATTGTAATCGGA 11887 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 | || || ||||| || | || || || || |||||||| ||||| ||| ||| Sbjct 11888 CAATGTACGACCGTCCTCCAGCTGCTTGCCCGCAAAGATCAGTCGCTGCTGATCTGGTGG 11947 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 || ||||| || ||||||||||| ||||| |||||||| |||| ||| | || || Sbjct 11948 AATGCCTTCCTTGTCCTGGATTTTTGCTTTGACGTTTTCGATAGTATCAGAAGCCTCCAC 12007 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 |||||| || || || || || |||| |||||| || || || |||||| Sbjct 12008 TTCGAGTGTTATGGTTTTACCCGTCAAAGTCTTTACAAAAATTTGCATT 12056 >seq4209 Length=23298 Score = 93.3 bits (102), Expect = 1e-13 Identities = 107/143 (75%), Gaps = 6/143 (4%) Strand=Plus/Plus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTC 288390 ||||| || |||| ||||| ||| |||||| || |||||||| ||||| |||||| Sbjct 2530 CCTGCAAAAATCAACCGCTGCTGA---TCTGGGGGTATGCCTTCTTTGTCCTGTATTTTC 2586 Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450 ||||| || || || || | ||| ||||| || || ||||| ||||| || || || Sbjct 2587 GCTTTTACATTCTCAATTGTATCCGAGGATTCGACCTCAAGCGTAATCGTTTTACCAGTT 2646 Query 288451 AGAGTCTTGACGAATATCTGCAT 288473 | ||||||||| || || ||||| Sbjct 2647 AAAGTCTTGACAAAAATTTGCAT 2669 >seq3175 Length=8402 Score = 93.3 bits (102), Expect = 1e-13 Identities = 107/143 (75%), Gaps = 6/143 (4%) Strand=Plus/Minus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTC 288390 ||||| || |||| ||||| ||| |||||| || |||||||| ||||| |||||| Sbjct 5252 CCTGCAAAAATCAACCGCTGCTGA---TCTGGGGGTATGCCTTCTTTGTCCTGTATTTTC 5196 Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450 ||||| || || || || | ||| ||||| || || ||||| ||||| || || || Sbjct 5195 GCTTTTACATTCTCAATTGTATCCGAGGATTCGACCTCAAGCGTAATCGTTTTACCAGTT 5136 Query 288451 AGAGTCTTGACGAATATCTGCAT 288473 | ||||||||| || || ||||| Sbjct 5135 AAAGTCTTGACAAAAATTTGCAT 5113 >seq4330 Length=27005 Score = 91.5 bits (100), Expect = 3e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393 ||||| || || || || || ||| | ||| || || || |||||||| ||||| | Sbjct 21274 CCTGCAAAAATAAGTCGTTGCTGATCAGGTGGAATACCCTCCTTATCCTGAATTTTAGTC 21215 Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453 ||||| || || |||| |||| ||||||||| || || || |||||||| || || | Sbjct 21214 TTCACATTCTCAATAGTATCGGACGATTCTACCTCAAGGGTAATCGTCTTTCCAGTTAAC 21155 Query 288454 GTCTTGACGAATATCTGCAT 288473 || || || ||||||||||| Sbjct 21154 GTTTTCACAAATATCTGCAT 21135 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179577241386190