Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Wuchereria_20bancrofti_20[genbank_20GCA_5F001555675.1_202016-02-09] 5,105 sequences; 90,325,107 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq4130 141 9e-29 seq4574 132 5e-26 >seq4130 Length=21019 Score = 141 bits (156), Expect = 9e-29 Identities = 162/215 (75%), Gaps = 2/215 (1%) Strand=Plus/Plus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 ||| ||||| || | |||||| || || ||||| |||||||| | | || || |||| Sbjct 11843 AAGAACTAGGTGCAGCGTCGACTCCTTCTGAATATTGTAATCGGACAATGTACGACCGTC 11902 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 || ||||||||||| ||| | || || |||||||| || || ||||| ||||| || || Sbjct 11903 CTCCAGCTGCTTGCCCGCAAAGATCAGTCGCTGCTGATCTGGTGGAATGCCTTCCTTGTC 11962 Query 64351 TTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGG 64409 || | |||||||||| || || | |||||| || |||||||| | |||| || Sbjct 11963 CTGGA-TTTTTGCTTTGACGTTTTCGATAGTATCAGAAGCCTCCACTTCGAGTGTTATGG 12021 Query 64410 TCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 | || || |||||||| ||||| |||||||||||| Sbjct 12022 TTTTACCCGTCAAAGTCTTTACAAAAATTTGCATT 12056 Score = 104 bits (114), Expect = 2e-17 Identities = 110/145 (76%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 64299 GCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTT 64358 |||| || ||| |||| || |||||||| || ||||| || |||||||| || || || | Sbjct 12546 GCTTACCAGCAAAAATAAGGCGCTGCTGATCCGGAGGGATCCCTTCTTTATCCTGAATCT 12605 Query 64359 TTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGG 64418 | ||||||| || | ||| ||| || || ||||||| || | |||||||| | Sbjct 12606 TGGCCTTTACATTTTCGATTGTGTCAGAAGCCTCAACTTCTAAGGTGATCGTCTTGCCCG 12665 Query 64419 TCAAAGTTTTTACGAAAATTTGCAT 64443 |||| |||||||| ||||||||||| Sbjct 12666 TCAATGTTTTTACAAAAATTTGCAT 12690 Score = 82.4 bits (90), Expect = 8e-11 Identities = 112/154 (73%), Gaps = 2/154 (1%) Strand=Plus/Plus Query 64304 CCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGC 64363 || ||| |||| || ||||||||||| || || || || || || ||||||| ||||||| Sbjct 13216 CCTGCAAAAATAAGGCGCTGCTGGTCTGGCGGGATACCCTCCTTGTCTTGTA-TTTTTGC 13274 Query 64364 TTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAA 64422 ||| ||| || | ||| || || ||||| || | ||| | ||||| || || | Sbjct 13275 TTTAACATTTTCAATTGTGTCTGAAGCCTCCACCTCAAGAGTGATCGTCTTTCCAGTTAG 13334 Query 64423 AGTTTTTACGAAAATTTGCATTTTAATAATGATA 64456 ||||| || || |||||||| || | || |||| Sbjct 13335 CGTTTTCACAAAGATTTGCATGTTTACAAGGATA 13368 >seq4574 Length=39733 Score = 132 bits (146), Expect = 5e-26 Identities = 160/215 (74%), Gaps = 2/215 (1%) Strand=Plus/Plus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 ||| || || || | |||||| || || ||||| || ||||| | | || || |||| Sbjct 20830 AAGAACCAGGTGCAGCGTCGACTCCTTCTGAATATTATAATCGGACAATGTACGACCGTC 20889 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 || ||||||||||| ||| | || || |||||||| || || ||||| ||||| || || Sbjct 20890 CTCCAGCTGCTTGCCCGCAAAGATCAGTCGCTGCTGATCTGGTGGAATGCCTTCCTTGTC 20949 Query 64351 TTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGG 64409 || | | |||||||| || || | |||||| || |||||||||| |||| || Sbjct 20950 CTGGA-TCTTTGCTTTGACGTTTTCGATAGTATCAGAAGCCTCCACTTCTAGTGTTATGG 21008 Query 64410 TCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 |||| || |||||||| ||||| ||||| |||||| Sbjct 21009 TCTTACCCGTCAAAGTCTTTACAAAAATCTGCATT 21043 Score = 113 bits (124), Expect = 5e-20 Identities = 112/145 (77%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 64299 GCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTT 64358 |||| || ||| ||||||| |||||||| || |||||||| |||||||| || || || | Sbjct 21533 GCTTACCAGCAAAAATGAGGCGCTGCTGATCCGGAGGAATCCCTTCTTTATCCTGAATCT 21592 Query 64359 TTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGG 64418 | ||| ||| || | ||||||| || || ||||||| || | |||||||| | Sbjct 21593 TGGCCTTCACATTTTCGATTGTATCAGAAGCCTCAACTTCTAAGGTGATCGTCTTGCCCG 21652 Query 64419 TCAAAGTTTTTACGAAAATTTGCAT 64443 |||| |||||||| ||||||||||| Sbjct 21653 TCAATGTTTTTACAAAAATTTGCAT 21677 Score = 91.5 bits (100), Expect = 1e-13 Identities = 114/154 (74%), Gaps = 2/154 (1%) Strand=Plus/Plus Query 64304 CCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGC 64363 || ||| |||| || ||||||||||| || || || || || || ||||||| ||||||| Sbjct 22208 CCTGCAAAAATAAGGCGCTGCTGGTCTGGCGGGATACCCTCCTTGTCTTGTA-TTTTTGC 22266 Query 64364 TTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAA 64422 ||| ||| || | ||| || || |||||||| | ||| | || || || |||| Sbjct 22267 TTTAACATTTTCAATTGTGTCTGAAGCCTCCACTTCAAGAGTGATTGTTTTTCCAGTCAG 22326 Query 64423 AGTTTTTACGAAAATTTGCATTTTAATAATGATA 64456 ||||| ||||| |||||||| || | || |||| Sbjct 22327 TGTTTTCACGAAGATTTGCATGTTTACAAGGATA 22360 Score = 82.4 bits (90), Expect = 8e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 64319 CGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACT 64378 ||||||||||| || |||||||| || || || || |||||| ||| ||| ||| | Sbjct 21899 CGCTGCTGGTCTGGCGGAATTCCCTCCTTGTCCTGGATTTTTGCCTTAACATTCTCGATG 21958 Query 64379 GTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATT 64438 |||||| || |||||||| | || | || || ||||| | |||||| || || ||| Sbjct 21959 GTATCAGATGCTTCCACTTCCAATGTGATTGTTTTACCGGTAAGAGTTTTAACAAAGATT 22018 Query 64439 TGCAT 64443 ||||| Sbjct 22019 TGCAT 22023 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499612916416200