Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Wuchereria_20bancrofti_20[genbank_20GCA_5F001555675.1_202016-02-09] 5,105 sequences; 90,325,107 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq4130 136 4e-27 seq4574 127 2e-24 >seq4130 Length=21019 Score = 136 bits (150), Expect = 4e-27 Identities = 151/199 (76%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 126916 CGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCC 126975 ||| ||||| || ||||||||||||||| || || ||| || || ||||| || || Sbjct 11858 CGTCGACTCCTTCTGAATATTGTAATCGGACAATGTACGACCGTCCTCCAGCTGCTTGCC 11917 Query 126976 AGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGC-T 127034 || |||||| |||||||||||| || || ||||| ||||||||| |||||| ||| | Sbjct 11918 CGCAAAGATCAGTCGCTGCTGATCTGGTGGAATGCCTTCCTTGTCCTGGATTTT-TGCTT 11976 Query 127035 TGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAG 127094 ||| | ||||| || || | | ||| ||||||| || | ||||| || |||| || Sbjct 11977 TGACGTTTTCGATAGTATCAGAAGCCTCCACTTCGAGTGTTATGGTTTTACCCGTCAAAG 12036 Query 127095 TTTTTACAAAAATCTGCAT 127113 | ||||||||||| ||||| Sbjct 12037 TCTTTACAAAAATTTGCAT 12055 Score = 95.1 bits (104), Expect = 1e-14 Identities = 107/141 (76%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 126974 CCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGC 127033 || ||| |||||||||||||||| || || || || |||||||||||| ||||||| | Sbjct 12896 CCCGCGAAGATCAATCGCTGCTGGTCTGGTGGAATTCCCTCCTTGTCCTGGATTTTCGCC 12955 Query 127034 TTGAGTTGTTCGACGGTGTCCG-TACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAG 127092 || | | |||| |||||| | | || || ||||| | || | ||||| || || || Sbjct 12956 TTAACATTCTCGATGGTGTCAGATGCT-TCCACTTCCAATGTGATTGTTTTACCAGTAAG 13014 Query 127093 AGTTTTTACAAAAATCTGCAT 127113 |||||| ||||| || ||||| Sbjct 13015 AGTTTTAACAAAGATTTGCAT 13035 >seq4574 Length=39733 Score = 127 bits (140), Expect = 2e-24 Identities = 167/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 |||||| || | || | |||| || | ||| ||||| || |||||||| |||||| Sbjct 20815 TCCACCACGAAGGCGAAGAACCAGGTGCAGCGTCGACTCCTTCTGAATATTATAATCGGA 20874 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 || || ||| || || ||||| || || || |||||| |||||||||||| || || Sbjct 20875 CAATGTACGACCGTCCTCCAGCTGCTTGCCCGCAAAGATCAGTCGCTGCTGATCTGGTGG 20934 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTCTCGA 127064 ||||| ||||||||| ||| || ||| |||| | ||||| || || | | ||| | Sbjct 20935 AATGCCTTCCTTGTCCTGGATCTT-TGCTTTGACGTTTTCGATAGTATCAGAAGCCTCCA 20993 Query 127065 CTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| | || | || || || |||| ||| ||||||||||||||||| Sbjct 20994 CTTCTAGTGTTATGGTCTTACCCGTCAAAGTCTTTACAAAAATCTGCAT 21042 Score = 89.7 bits (98), Expect = 5e-13 Identities = 106/141 (75%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 126974 CCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGC 127033 || ||| |||||||||||||||| || || || || |||||||||||| |||||| | Sbjct 21884 CCCGCGAAGATCAATCGCTGCTGGTCTGGCGGAATTCCCTCCTTGTCCTGGATTTTTGCC 21943 Query 127034 TTGAGTTGTTCGACGGTGTCCG-TACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAG 127092 || | | |||| ||| || | | || || ||||| | || | ||||| ||||| || Sbjct 21944 TTAACATTCTCGATGGTATCAGATGCT-TCCACTTCCAATGTGATTGTTTTACCGGTAAG 22002 Query 127093 AGTTTTTACAAAAATCTGCAT 127113 |||||| ||||| || ||||| Sbjct 22003 AGTTTTAACAAAGATTTGCAT 22023 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475470457105200