Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Wuchereria_20bancrofti_20[genbank_20GCA_5F001555675.1_202016-02-09] 5,105 sequences; 90,325,107 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq4130 123 2e-23 seq4574 105 6e-18 seq4209 86.0 6e-12 seq3175 86.0 6e-12 >seq4130 Length=21019 Score = 123 bits (136), Expect = 2e-23 Identities = 155/211 (73%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAA--TCGT 45189 ||||| |||||||| || ||||| || ||||| |||||| ||| | | || || | Sbjct 11847 ACTAGGTGCAGCGTCGACTCCTTCTGAATATTGTAATCG--GACAATGTACGACCGTCCT 11904 Query 45190 CCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTT 45249 ||| || || || || | |||| ||| ||||| || || ||||||||||| || || | Sbjct 11905 CCAGCTGCTTGCCCGCAAAGATCAGTCGCTGCTGATCTGGTGGAATGCCTTCCTTGTCCT 11964 Query 45250 GAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTT 45309 | |||||| ||||| ||| | || || |||| ||| |||||||| || | |||| Sbjct 11965 GGATTTTTGCTTTGACGTTTTCGATAGTATCAGAAGCCTCCACTTCGAGTGTTATGGTTT 12024 Query 45310 TGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 | || || | ||| ||||||||||||||||| Sbjct 12025 TACCCGTCAAAGTCTTTACAAAAATTTGCAT 12055 Score = 82.4 bits (90), Expect = 7e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 45216 CGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACG 45275 || ||||| ||||| || || ||||||||||| ||||| || || | ||| | Sbjct 12566 CGCTGCTGATCCGGAGGGATCCCTTCTTTATCCTGAATCTTGGCCTTTACATTTTCGATT 12625 Query 45276 GTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATT 45335 ||||| |||| ||| ||||| | || | ||| ||||| || | ||||||||||||||| Sbjct 12626 GTGTCAGAAGCCTCAACTTCTAAGGTGATCGTCTTGCCCGTCAATGTTTTTACAAAAATT 12685 Query 45336 TGCAT 45340 ||||| Sbjct 12686 TGCAT 12690 >seq4574 Length=39733 Score = 105 bits (116), Expect = 6e-18 Identities = 151/211 (72%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAA--TCGT 45189 || || |||||||| || ||||| || |||||||||||| ||| | | || || | Sbjct 20834 ACCAGGTGCAGCGTCGACTCCTTCTGAATATTATAATCG--GACAATGTACGACCGTCCT 20891 Query 45190 CCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTT 45249 ||| || || || || | |||| ||| ||||| || || ||||||||||| || || | Sbjct 20892 CCAGCTGCTTGCCCGCAAAGATCAGTCGCTGCTGATCTGGTGGAATGCCTTCCTTGTCCT 20951 Query 45250 GAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTT 45309 | || ||| ||||| ||| | || || |||| ||| ||||| || || | || | Sbjct 20952 GGATCTTTGCTTTGACGTTTTCGATAGTATCAGAAGCCTCCACTTCTAGTGTTATGGTCT 21011 Query 45310 TGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 | || || | ||| ||||||||||| ||||| Sbjct 21012 TACCCGTCAAAGTCTTTACAAAAATCTGCAT 21042 Score = 82.4 bits (90), Expect = 7e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 45216 CGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACG 45275 || ||||| ||||| ||||| ||||||||||| ||||| || || | ||| | Sbjct 21553 CGCTGCTGATCCGGAGGAATCCCTTCTTTATCCTGAATCTTGGCCTTCACATTTTCGATT 21612 Query 45276 GTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATT 45335 || || |||| ||| ||||| | || | ||| ||||| || | ||||||||||||||| Sbjct 21613 GTATCAGAAGCCTCAACTTCTAAGGTGATCGTCTTGCCCGTCAATGTTTTTACAAAAATT 21672 Query 45336 TGCAT 45340 ||||| Sbjct 21673 TGCAT 21677 >seq4209 Length=23298 Score = 86.0 bits (94), Expect = 6e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 45201 CCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGT 45260 ||||| | ||||| || ||||| || || || ||||||||||| || || ||||| | Sbjct 2530 CCTGCAAAAATCAACCGCTGCTGATCTGGGGGTATGCCTTCTTTGTCCTGTATTTTCGCT 2589 Query 45261 TTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGA 45320 || | || | || || || || ||||| || || |||| |||||| || |||| | Sbjct 2590 TTTACATTCTCAATTGTATCCGAGGATTCGACCTCAAGCGTAATCGTTTTACCAGTTAAA 2649 Query 45321 GTTTTTACAAAAATTTGCAT 45340 || || |||||||||||||| Sbjct 2650 GTCTTGACAAAAATTTGCAT 2669 >seq3175 Length=8402 Score = 86.0 bits (94), Expect = 6e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 45201 CCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGT 45260 ||||| | ||||| || ||||| || || || ||||||||||| || || ||||| | Sbjct 5252 CCTGCAAAAATCAACCGCTGCTGATCTGGGGGTATGCCTTCTTTGTCCTGTATTTTCGCT 5193 Query 45261 TTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGA 45320 || | || | || || || || ||||| || || |||| |||||| || |||| | Sbjct 5192 TTTACATTCTCAATTGTATCCGAGGATTCGACCTCAAGCGTAATCGTTTTACCAGTTAAA 5133 Query 45321 GTTTTTACAAAAATTTGCAT 45340 || || |||||||||||||| Sbjct 5132 GTCTTGACAAAAATTTGCAT 5113 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451974356545800