Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Wuchereria_20bancrofti_20[genbank_20GCA_5F001555675.1_202016-02-09] 5,105 sequences; 90,325,107 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq4130 113 1e-19 seq4574 109 1e-18 >seq4130 Length=21019 Score = 113 bits (124), Expect = 1e-19 Identities = 158/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || || ||||| || ||||||||||| || | ||||| || | ||| || Sbjct 11835 CGAAGGCGAAGAACTAGGTGCAGCGTCGACTCCTTCTGAATATTGTAATCGGACAATGTA 11894 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || || ||||||||||| || || ||||| || |||||||| || || ||| ||| Sbjct 11895 CGACCGTCCTCCAGCTGCTTGCCCGCAAAGATCAGTCGCTGCTGATCTGGTGGAATGCCT 11954 Query 199529 TCTCGCTCCTGAATCTTTTGC-TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 || ||||| || |||||| || ||| ||||| || || | | || || || | Sbjct 11955 TCCTTGTCCTGGAT-TTTTGCTTTGACGTTTTCGATAGTATCAGAAGCCTCCACTTCGAG 12013 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || |||||||| | ||| || ||||||||||| Sbjct 12014 TGTTATGGTTTTACCCGTCAAAGTCTTTACAAAAATTTG 12052 Score = 89.7 bits (98), Expect = 1e-12 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 199485 GCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCT 199544 |||| || || || || || |||||||| |||||| || |||||| |||||||||| Sbjct 12546 GCTTACCAGCAAAAATAAGGCGCTGCTGATCCGGAGGGATCCCTTCTTTATCCTGAATCT 12605 Query 199545 TTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCG 199604 | ||| || ||||| ||||| | | || || || || ||||||||||| |||| Sbjct 12606 TGGCCTTTACATTTTCGATTGTGTCAGAAGCCTCAACTTCTAAGGTGATCGTCTTGCCCG 12665 Query 199605 TGAGAGTTTTCACAAAAATTTG 199626 | | ||||| ||||||||||| Sbjct 12666 TCAATGTTTTTACAAAAATTTG 12687 Score = 86.0 bits (94), Expect = 1e-11 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 199490 CCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGC 199549 || |||||||| | ||||||||||| || |||||| || ||||| || || | Sbjct 12896 CCCGCGAAGATCAATCGCTGCTGGTCTGGTGGAATTCCCTCCTTGTCCTGGATTTTCGCC 12955 Query 199550 TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGA 199609 || || |||| |||||| | || ||| || ||||| ||||| || ||||| || ||| Sbjct 12956 TTAACATTCTCGATGGTGTCAGATGCTTCCACTTCCAATGTGATTGTTTTACCAGTAAGA 13015 Query 199610 GTTTTCACAAAAATTTG 199626 ||||| ||||| ||||| Sbjct 13016 GTTTTAACAAAGATTTG 13032 >seq4574 Length=39733 Score = 109 bits (120), Expect = 1e-18 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || || ||||| || ||||||||||| || | || || || | ||| || Sbjct 20822 CGAAGGCGAAGAACCAGGTGCAGCGTCGACTCCTTCTGAATATTATAATCGGACAATGTA 20881 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || || ||||||||||| || || ||||| || |||||||| || || ||| ||| Sbjct 20882 CGACCGTCCTCCAGCTGCTTGCCCGCAAAGATCAGTCGCTGCTGATCTGGTGGAATGCCT 20941 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| |||||| || ||| ||||| || || | | || || || | Sbjct 20942 TCCTTGTCCTGGATCTTTGCTTTGACGTTTTCGATAGTATCAGAAGCCTCCACTTCTAGT 21001 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||||||||| | ||| || |||||||| || Sbjct 21002 GTTATGGTCTTACCCGTCAAAGTCTTTACAAAAATCTG 21039 Score = 98.7 bits (108), Expect = 2e-15 Identities = 107/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 199485 GCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCT 199544 |||| || || || ||||| |||||||| |||||| ||| |||||| |||||||||| Sbjct 21533 GCTTACCAGCAAAAATGAGGCGCTGCTGATCCGGAGGAATCCCTTCTTTATCCTGAATCT 21592 Query 199545 TTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCG 199604 | |||||| ||||| || || | | || || || || ||||||||||| |||| Sbjct 21593 TGGCCTTCACATTTTCGATTGTATCAGAAGCCTCAACTTCTAAGGTGATCGTCTTGCCCG 21652 Query 199605 TGAGAGTTTTCACAAAAATTTG 199626 | | ||||| ||||||||||| Sbjct 21653 TCAATGTTTTTACAAAAATTTG 21674 Score = 86.0 bits (94), Expect = 1e-11 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 199490 CCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGC 199549 || |||||||| | ||||||||||| || |||||| || ||||| || ||| | Sbjct 21884 CCCGCGAAGATCAATCGCTGCTGGTCTGGCGGAATTCCCTCCTTGTCCTGGATTTTTGCC 21943 Query 199550 TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGA 199609 || || |||| ||| || | || ||| || ||||| ||||| || ||||| || ||| Sbjct 21944 TTAACATTCTCGATGGTATCAGATGCTTCCACTTCCAATGTGATTGTTTTACCGGTAAGA 22003 Query 199610 GTTTTCACAAAAATTTG 199626 ||||| ||||| ||||| Sbjct 22004 GTTTTAACAAAGATTTG 22020 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178844489317035