Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Wuchereria_20bancrofti_20[genbank_20GCA_5F001555675.1_202016-02-09] 5,105 sequences; 90,325,107 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq4209 89.7 4e-13 seq3175 89.7 4e-13 >seq4209 Length=23298 Score = 89.7 bits (98), Expect = 4e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 39584 CAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAA 39643 ||||||| || ||||||||||| | ||||| |||||||||||| |||||| ||| | Sbjct 2534 CAAAAATCAACCGCTGCTGATCTGGGGGTATGCCTTCTTTGTCCTGTATTTTCGCTTTTA 2593 Query 39644 TCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTT 39703 || | | ||| || | | ||| || || | ||||| |||||||| |||||||| | Sbjct 2594 CATTCTCAATTGTATCCGAGGATTCGACCTCAAGCGTAATCGTTTTACCAGTTAAAGTCT 2653 Query 39704 TTACGAAGATCTGCATG 39720 | || || || |||||| Sbjct 2654 TGACAAAAATTTGCATG 2670 >seq3175 Length=8402 Score = 89.7 bits (98), Expect = 4e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 39584 CAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAA 39643 ||||||| || ||||||||||| | ||||| |||||||||||| |||||| ||| | Sbjct 5248 CAAAAATCAACCGCTGCTGATCTGGGGGTATGCCTTCTTTGTCCTGTATTTTCGCTTTTA 5189 Query 39644 TCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTT 39703 || | | ||| || | | ||| || || | ||||| |||||||| |||||||| | Sbjct 5188 CATTCTCAATTGTATCCGAGGATTCGACCTCAAGCGTAATCGTTTTACCAGTTAAAGTCT 5129 Query 39704 TTACGAAGATCTGCATG 39720 | || || || |||||| Sbjct 5128 TGACAAAAATTTGCATG 5112 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347347987640465