Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Wuchereria_20bancrofti_20[genbank_20GCA_5F001555675.1_202016-02-09] 5,105 sequences; 90,325,107 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq4026 161 4e-34 seq5105 150 7e-31 seq4864 91.5 6e-13 seq4574 91.5 6e-13 >seq4026 Length=18768 Score = 161 bits (178), Expect = 4e-34 Identities = 167/219 (76%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 451232 AAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCA 451291 ||||| || || ||||| || |||||| | ||||||||| |||||||| |||| || Sbjct 9836 AAAACCTTCGCACCTGAGGAGATTTCAGCAATGGTTCTTGGCAAAATGAAGGAAATTGCG 9777 Query 451292 GAACAATATATTGGTTCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAAT 451351 ||| |||| | || ||| | ||||||| |||| || || ||||| || ||| Sbjct 9776 GAAGCATATCTAGGAAAGGAAGTAAAACATGCAGTCGTTACGGTACCTGCTTACTTTAAT 9717 Query 451352 GATGCACAACGGCAAGCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGA 451411 ||||||||||| ||||| || ||||||||||| |||||| ||| | |||||| |||| Sbjct 9716 GATGCACAACGTCAAGCTACCAAAGATGCAGGTACTATTGCCGGTCTCAATGTTGTTCGT 9657 Query 451412 ATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGGA 451450 || || |||||||||||||| || ||| | ||||||||| Sbjct 9656 ATCATCAATGAACCTACAGCTGCCGCTATTGCATATGGA 9618 Score = 89.7 bits (98), Expect = 2e-12 Identities = 161/236 (68%), Gaps = 6/236 (3%) Strand=Plus/Minus Query 451991 AATCCTGATGAAGCTGTTGCATATGGTGCTGCAGTTCAAGCAGCTATTCTAACAGGTTCA 452050 ||||| ||||||||||| ||||||||||| |||||||| || | | || | ||| Sbjct 8464 AATCCAGATGAAGCTGTGGCATATGGTGCAGCAGTTCAGGCTGGTGTTAT------TTCG 8411 Query 452051 GATGATGAAAAATTAGGAGATATTCTGTTAGTAGATGTAACACCTCTATCTCTTGGAGTT 452110 | ||| |||| || || ||| | || ||||||| | ||| | | ||||| || Sbjct 8410 GGTGAAGAAAGTACTGGTGACATTGTATTGTTAGATGTGAATCCTTTGACCCTTGGTATT 8351 Query 452111 GAAACAGCTGGTGGAATGATGACTAATTTAATTAAACGAGGAACTTCTATTCCTTGTAAA 452170 |||||| ||| || | ||||| || | ||| | || ||| ||||||| || Sbjct 8350 GAAACAATTGGCGGTGTTATGACCAAACTCATTCAGAGAAACACTGTTATTCCTACCAAG 8291 Query 452171 AAGAGTCAAACATTTAGTACAGCAAGTGATAACCAACCAGGTGTAACTATTCAAGT 452226 |||||||| | || ||| ||| ||||||||| ||| || ||||| || || Sbjct 8290 AAGAGTCAGATTTTCTCTACGGCAGCTGATAACCAGCCAACAGTCACTATCCAGGT 8235 >seq5105 Length=689533 Score = 150 bits (166), Expect = 7e-31 Identities = 173/233 (74%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 451217 TATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTTCTTACTAAA 451276 || || ||||| || || || ||| |||| ||||| ||||| || |||||| | |||| Sbjct 52997 TACAAGGGTGAGACAAAGACCTTTACTCCAGAAGAGATTTCGTCGATGGTTTTGGTTAAA 52938 Query 451277 ATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTAATTACTGTT 451336 ||||| || || || ||| | | | ||| | | || | ||||| || ||||| || Sbjct 52937 ATGAAGGAGACGGCTGAAGCTTTTCTGGGTCATGCGGTCAAGGATGCTGTTATTACAGTC 52878 Query 451337 CCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATTGCTGGT 451396 ||||| ||||| ||||| |||| || ||||| ||||||||| | || ||||||||| Sbjct 52877 CCCGCATATTTTAATGACTCACAGCGACAAGCCACTAAAGATTCCGGTGCAATTGCTGGT 52818 Query 451397 TTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGG 451449 ||||||| | || ||||| || ||||| |||||||||||| | || ||||| Sbjct 52817 CTAAATGTCTTGCGTATTATCAACGAACCAACAGCAGCTGCTATTGCTTATGG 52765 Score = 125 bits (138), Expect = 3e-23 Identities = 136/178 (76%), Gaps = 2/178 (1%) Strand=Plus/Minus Query 452315 CCTCAAATTGAAATTACCTATGATGTTGATGCAAATGGTATTCTTAATGTGAGTGCAGTT 452374 || ||||| ||| | || | |||| ||||||||||||||||||| ||||| |||| Sbjct 56340 CCACAAATCGAAGTAACGTTTGATATTGATGCAAATGGTATTCTGAATGTCTCTGCACAA 56281 Query 452375 GAAAAATCATCTGGAAAATCAGAAAAA-ATTACAATTACTAATGATAAAAACCGTTTATC 452433 || ||||| | || || || || || || ||||||||||| || ||| |||||| || Sbjct 56280 GATAAATCCACAGGCAAG-CACAATAAGATAACAATTACTAACGACAAAGGCCGTTTGTC 56222 Query 452434 TAAAGAAGATATTGAAAAAATGGTAGATGAAGCAGAAAAATTCAAGGATGATGATGAA 452491 || || || || |||| ||||||| | ||||| ||||||| ||||| |||||| ||| Sbjct 56221 AAAGGACGAAATCGAAAGAATGGTACAGGAAGCTGAAAAATACAAGGCTGATGACGAA 56164 Score = 123 bits (136), Expect = 1e-22 Identities = 109/136 (80%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 451319 GATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGAT 451378 ||||| ||| | ||||| || || |||||||| ||| | ||||||||||||||||||||| Sbjct 57867 GATGCCGTAGTAACTGTGCCAGCATATTTCAACGATTCCCAACGGCAAGCAACTAAAGAT 57808 Query 451379 GCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCT 451438 ||||| |||||||| | || ||||||||||| || |||||||| || || |||||| Sbjct 57807 GCAGGTGCCATTGCTGGCCTGAACGTTCTTCGAATCATCAATGAACCAACCGCTGCTGCT 57748 Query 451439 CTAGCATATGGACTAG 451454 | || || || |||| Sbjct 57747 ATTGCGTACGGTCTAG 57732 Score = 86.0 bits (94), Expect = 2e-11 Identities = 114/158 (72%), Gaps = 14/158 (9%) Strand=Plus/Minus Query 452003 GCTGTTGCATATGGTGCTGCAGTTCAAGCAGCTATTCTAACAGGT------TCAGATGAT 452056 ||||| || |||||||||||||| |||||||| ||| || |||| || |||| | Sbjct 56751 GCTGTAGCTTATGGTGCTGCAGTGCAAGCAGCAATTTTATCAGGCGATAAATCGGATGCT 56692 Query 452057 GAAAAATTAGGAGATATTCTGTTAGTAGATGTAACACCTCTATCTCTTGGAGTTGAAACA 452116 | | || ||| | || ||| | ||||| |||| ||||| || || | |||||| Sbjct 56691 GTACAA------GATTTACTATTATTGGATGTTGCACCACTATCACTGGGTATCGAAACA 56638 Query 452117 GCTGGTGGAATGATGACTAATTTAATTAAACGAGGAAC 452154 |||||||| |||||||| ||||| ||| |||||| Sbjct 56637 GCTGGTGGTGTGATGACTGCGTTAATAAAA--AGGAAC 56602 >seq4864 Length=78114 Score = 91.5 bits (100), Expect = 6e-13 Identities = 65/74 (88%), Gaps = 2/74 (3%) Strand=Plus/Plus Query 509506 GCCTTATTAGCTCAGTTGGATTAGAGCAGCAGGCTTTTAACCTGATGGTCGTGGGTTCGA 509565 ||||| ||||||||||||| ||||||| ||| ||||||| |||| |||||||||||||| Sbjct 47832 GCCTTCTTAGCTCAGTTGG--TAGAGCATCAGACTTTTAATCTGAGGGTCGTGGGTTCGA 47889 Query 509566 GTCCCACATAAGGC 509579 |||||||| | ||| Sbjct 47890 GTCCCACAGAGGGC 47903 Score = 86.0 bits (94), Expect = 2e-11 Identities = 64/74 (86%), Gaps = 2/74 (3%) Strand=Plus/Plus Query 510741 GCCTTATTAGCTCAGTTGGATTAGAGCAGCAGGCTTTTAACCTGATGGTCGTGGGTTCGA 510800 ||||| ||||||||||||| ||||||| ||| ||||||| |||| |||||||||||||| Sbjct 47832 GCCTTCTTAGCTCAGTTGG--TAGAGCATCAGACTTTTAATCTGAGGGTCGTGGGTTCGA 47889 Query 510801 ATCCCACATAAGGC 510814 ||||||| | ||| Sbjct 47890 GTCCCACAGAGGGC 47903 Score = 86.0 bits (94), Expect = 2e-11 Identities = 64/74 (86%), Gaps = 2/74 (3%) Strand=Plus/Plus Query 511655 GCCTTATTAGCTCAGTTGGATTAGAGCAGCAGGCTTTTAACCTGATGGTCGTGGGTTCGA 511714 ||||| ||||||||||||| ||||||| ||| ||||||| |||| |||||||||||||| Sbjct 47832 GCCTTCTTAGCTCAGTTGG--TAGAGCATCAGACTTTTAATCTGAGGGTCGTGGGTTCGA 47889 Query 511715 ATCCCACATAAGGC 511728 ||||||| | ||| Sbjct 47890 GTCCCACAGAGGGC 47903 >seq4574 Length=39733 Score = 91.5 bits (100), Expect = 6e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || ||||| |||||||||||||| ||||| || |||||||| || || | || Sbjct 22347 ATGCAAATCTTCGTGAAAACACTGACTGGAAAAACAATCACTCTTGAAGTGGAGGCTTCA 22288 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | |||||| | ||||| |||||| ||||| ||||| || || || || || || Sbjct 22287 GACACAATTGAAAATGTTAAAGCAAAAATACAAGACAAGGAGGGTATCCCGCCAGACCAG 22228 Query 391170 CAACGTTTAATTTTCTCAGG 391189 || || | ||||| |||| Sbjct 22227 CAGCGCCTTATTTTTGCAGG 22208 Score = 86.0 bits (94), Expect = 2e-11 Identities = 142/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | ||||| || || || |||| ||||| || || || || || || || | || Sbjct 21043 AATGCAGATTTTTGTAAAGACTTTGACGGGTAAGACCATAACACTAGAAGTGGAGGCTTC 20984 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 ||||| || ||| | ||| ||| || || || |||||||| ||||| || ||||| Sbjct 20983 TGATACTATCGAAAACGTCAAAGCAAAGATCCAGGACAAGGAAGGCATTCCACCAGATCA 20924 Query 391169 ACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAA 391228 || || | || || | || || || || || || || | || ||| | |||||||| Sbjct 20923 GCAGCGACTGATCTTTGCGGGCAAGCAGCTGGAGGACGGTCGTACATTGTCCGATTATAA 20864 Query 391229 TATTGATAAGGATGCAACACTTCAC 391253 |||| | ||||| | || || ||| Sbjct 20863 TATTCAGAAGGAGTCGACGCTGCAC 20839 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975589172581340