Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Wuchereria_20bancrofti_20[genbank_20GCA_5F001555675.1_202016-02-09] 5,105 sequences; 90,325,107 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq5105 185 7e-41 seq4026 132 4e-25 seq5104 89.7 4e-12 >seq5105 Length=689533 Score = 185 bits (204), Expect = 7e-41 Identities = 262/368 (71%), Gaps = 3/368 (1%) Strand=Plus/Plus Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224 || || || | |||||| |||| |||||| || |||||||| || ||||| | ||| ||| Sbjct 52753 TTCTTGTCCAAACCATAAGCAATAGCAGCTGCTGTTGGTTCGTTGATAATACGCAAGACA 52812 Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284 || |||||||||||| || | ||||||||||||||||| ||||| || ||||||||| Sbjct 52813 TTTAGACCAGCAATTGCACCGGAATCTTTAGTGGCTTGTCGCTGTGAGTCATTAAAATAT 52872 Query 518285 GCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATATAAGCGCTTGCCGTTTGT 518344 || || || |||||||| ||||| | || | | ||| | | |||| ||||| | Sbjct 52873 GCGGGGACTGTAATAACAGCATCCTTGACCGCATGACCCAGAAAAGCTTCAGCCGTCTCC 52932 Query 518345 TTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGGGAATATTGCTTGGATTCATTT 518404 ||||||||| |||| ||| || ||||| | |||||| | | | ||| | ||| Sbjct 52933 TTCATTTTAACCAAAACCATCGACGAAATCTCTTCTGGAGTAAAGGTCTTTGTCTCACCC 52992 Query 518405 TGATATGATACTTCAAAATATGGTTT---ATTACCAACATTAATAACTTTAAATGGCCAG 518461 | ||| || | | | ||||| | |||| |||| | |||||||||||||| Sbjct 52993 TTGTATTCAACCTGCACTTTAGGTTTACCACCACCAGCATTCACTACTTTAAATGGCCAA 53052 Query 518462 TATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGTTTTGCA 518521 | ||||||||| ||||| || | |||| ||| | | |||||| | |||||| || Sbjct 53053 TGTTTCATATCCGATTGCACTGATCCATCATCAAACTTACGACCAATCAGTCGTTTAGCG 53112 Query 518522 TCAAAAAT 518529 || |||| Sbjct 53113 TCTGAAAT 53120 Score = 136 bits (150), Expect = 3e-26 Identities = 116/143 (81%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224 || ||||| ||||| ||||||| ||||||||| ||||||||||| || |||| | ||| Sbjct 57725 TTCTTATCTAGACCGTACGCAATAGCAGCAGCGGTTGGTTCATTGATGATTCGAAGAACG 57784 Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284 || || |||||||| |||||||||||||| ||||| | ||| |||||||| |||||| Sbjct 57785 TTCAGGCCAGCAATGGCACCTGCATCTTTAGTTGCTTGCCGTTGGGAATCGTTGAAATAT 57844 Query 518285 GCAGGAACAGTAATAACGGCATC 518307 || || ||||| | |||||||| Sbjct 57845 GCTGGCACAGTTACTACGGCATC 57867 Score = 109 bits (120), Expect = 4e-18 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 517174 CATTCTCTCAATTTGATCTTCAGAGAATCTTCCGCGATTATTAGTAATAGTAATATTCTT 517233 ||| | ||| || | ||| | || || | ||| || ||| ||||| ||||| || || Sbjct 51211 CATCCGCTCGATCTCATCCTTTGACAAACGTCCTTTATCATTGGTAATGGTAATTTTGTT 51270 Query 517234 GGATTTGTTTGTTGATTTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATC 517293 |||| ||| |||||||| ||| | ||||| |||||||| |||||||| | ||| Sbjct 51271 TTGTTTGCCTGTGGATTTATCCTGGGCGGAAACATTCAGAATACCGTTGGCATCAATATC 51330 Query 517294 AAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAA 517353 ||| |||||||||||||| || || || | ||||||| || || || ||| | || Sbjct 51331 AAAGGTGACTTCAATTTGCGGCACACCGCGAGGAGCAGGCGGAATTCCAGACAACTCGAA 51390 Query 517354 TGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTCACCCTCGAAAA 517403 | | || || ||||| ||||| || || |||||||| ||| ||| Sbjct 51391 TTTACCAAGCAAGTTATTGTCTTTGGTCAAAGCACGTTCACCTTCGTAAA 51440 Score = 96.9 bits (106), Expect = 3e-14 Identities = 100/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 322241 AAACCGTATGCAAGAGCTGCTGCAGTTGGTTCATTAATTATTTTAAGAACATCTAAACCC 322300 ||||| || |||| ||| ||||| |||||||| || || || | |||| || ||| Sbjct 52762 AAACCATAAGCAATAGCAGCTGCTGTTGGTTCGTTGATAATACGCAAGACATTTAGACCA 52821 Query 322301 GCAATTTTAGCAGAATCAAGAGTTGCTTGTCTCTGTGCGTCATTAAAATATGCTGGTACA 322360 |||||| | | ||||| ||| ||||||| ||||| ||||||||||||||| || || Sbjct 52822 GCAATTGCACCGGAATCTTTAGTGGCTTGTCGCTGTGAGTCATTAAAATATGCGGGGACT 52881 Query 322361 GTAATAACTGC 322371 |||||||| || Sbjct 52882 GTAATAACAGC 52892 Score = 95.1 bits (104), Expect = 9e-14 Identities = 75/90 (83%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 518540 GGATTAATTGCAGCTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAAT 518599 ||||| |||||| | |||| |||||||||||| ||||| ||| |||| || || |||||| Sbjct 53305 GGATTCATTGCAACCTGATTTTTGGCTGCATCGCCAATAAGACGTTCAGTATCGGTAAAT 53364 Query 518600 GAAACATATGATGGAGTTGTGCGATTACCT 518629 | ||||| ||||| ||||| ||||||||| Sbjct 53365 GCCACATACGATGGTGTTGTACGATTACCT 53394 Score = 95.1 bits (104), Expect = 9e-14 Identities = 136/191 (71%), Gaps = 3/191 (2%) Strand=Plus/Plus Query 518336 GCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGGGAATATTGCTTG 518395 ||||| | ||||||||| | |||| ||| || ||||||| |||||| | | || || Sbjct 58277 GCCGTCTCTTTCATTTTCCCCAAAACCATGGAAGAAATTTCTTCTGGTGTAAATGTTTTT 58336 Query 518396 GATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTA---ATAACTTTA 518452 | ||| || ||| ||||| || | ||| || |||| || | || |||||| Sbjct 58337 GTTTCGCCTTTGTATTCTACTTGAACTTTTGGCTTGCCACCATCAGCACTGATGACTTTA 58396 Query 518453 AATGGCCAGTATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAAT 518512 || ||||||| |||||||||||||| || | | |||| ||| | ||||| || || Sbjct 58397 AAGGGCCAGTGCTTCATATCTGATTGTACCGCTGGATCATCAAATTTCCTACCGATCAAC 58456 Query 518513 CGTTTTGCATC 518523 ||||||||||| Sbjct 58457 CGTTTTGCATC 58467 Score = 86.0 bits (94), Expect = 5e-11 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 518523 CAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTCCAATCAGAT 518582 |||||| |||||| |||||| || ||| |||| | ||| || ||||| ||||||| Sbjct 58623 CAAAAACAGTATTATGTGGATTCATAGCAACTTGGTTTTTTGCCGCATCACCAATCAAGC 58682 Query 518583 GTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCT 518629 | || || || || |||| |||||||||||| ||||| ||||| ||| Sbjct 58683 GCTCGGTATCAGTGAATGCAACATATGATGGGGTTGTTCGATTGCCT 58729 >seq4026 Length=18768 Score = 132 bits (146), Expect = 4e-25 Identities = 160/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 518156 TTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATT 518215 ||| ||| || ||||| | ||||| |||| ||| ||||| || |||||||| || || Sbjct 9598 TTGCCTTCCTTCTTATCCAATCCATATGCAATAGCGGCAGCTGTAGGTTCATTGATGATA 9657 Query 518216 CTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCG 518275 | | |||||| ||||| ||||| | ||||||||||| || ||||| | ||||| ||| Sbjct 9658 CGAACAACATTGAGACCGGCAATAGTACCTGCATCTTTGGTAGCTTGACGTTGTGCATCA 9717 Query 518276 TTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATATAAGCGCTT 518335 ||||| || ||||| || |||| || |||| ||||||| || || | ||| || Sbjct 9718 TTAAAGTAAGCAGGTACCGTAACGACTGCATGTTTTACTTCCTTTCCTAGATATGCTTCC 9777 Query 518336 GCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAAT 518373 || ||| |||||||| | | || ||||| |||||| Sbjct 9778 GCAATTTCCTTCATTTTGCCAAGAACCATTGCTGAAAT 9815 Score = 104 bits (114), Expect = 2e-16 Identities = 169/242 (70%), Gaps = 6/242 (2%) Strand=Plus/Plus Query 518447 ACTTTAAATGGCCAGTATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCA 518506 || || || ||||| | ||| |||||| || ||| || || || | |||| ||| Sbjct 9976 ACATTGAAAGGCCAATGTTTAATATCTTGCTGTACAGTTGAATCCTTGTACTCTCGGCCA 10035 Query 518507 ATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCT 518566 || | ||||| ||||||| | |||||| ||||| ||| |||| ||||||| Sbjct 10036 ATCAGACGTTTAACATCAAAGACAGTATTTTCCGGATTCGTTGTTAACTGATTTTTGGCT 10095 Query 518567 GCATCTCCAATCAGATGTTCT--GTCT----CTGTAAATGAAACATATGATGGAGTTGTG 518620 ||||| ||||| ||| | || | || | || |||| ||| |||||||| || | Sbjct 10096 GCATCACCAATAAGACGCTCACCGCCTTCACCAGTGAATGCAACGTATGATGGCGTGATT 10155 Query 518621 CGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAA 518680 ||||||||||| ||||| ||||| ||||| ||| ||||||| | || || ||||| Sbjct 10156 CGATTACCTTGTTCATTTGCAATGATTTCCACTCGTCCATTTTTATAGACTCCAACACAG 10215 Query 518681 CT 518682 || Sbjct 10216 CT 10217 >seq5104 Length=557454 Score = 89.7 bits (98), Expect = 4e-12 Identities = 124/173 (72%), Gaps = 3/173 (2%) Strand=Plus/Minus Query 518162 TGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAA 518221 || ||||||||||||| || |||| || |||||| || ||||||||| |||| | Sbjct 18380 TGCTTTTTATCAAGACTGTAAGCAAGCGCCGCAGCAATTAGTTCATTAACTATTCAAAGT 18321 Query 518222 ACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAA 518281 ||||| | || ||||| ||||||||||||| || || | ||| |||| || || Sbjct 18320 ACATTCAATCCGACAATTTTTCCTGCATCTTTTGTTGCCTAATGTTGAGAATTATTGAAG 18261 Query 518282 TATGCAG---GAACAGTAATAACGGCATCAGTTACTTCTTTACCAATATAAGC 518331 ||||| | | || || || || ||||| ||||| |||| || |||||| Sbjct 18260 TATGCTGCTAGCACTGTTATCACAGCATCTTTTACTCCTTTCTAAAGATAAGC 18208 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780569073084130