Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Wuchereria_20bancrofti_20[genbank_20GCA_5F001555675.1_202016-02-09]
5,105 sequences; 90,325,107 total letters
Query= NC_014765.1
Length=198519
Score E
Sequences producing significant alignments: (Bits) Value
seq5105 134 2e-26
seq3379 89.7 7e-13
>seq5105
Length=689533
Score = 134 bits (148), Expect = 2e-26
Identities = 116/144 (81%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 7595 TTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAG 7654
|||||||| ||||||||||| ||||| || || ||||||||||| || || |||||| |
Sbjct 57725 TTCTTATCTAGACCGTACGCAATAGCAGCAGCGGTTGGTTCATTGATGATTCGAAGAACG 57784
Query 7655 TTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAG 7714
|||||||||||||| | | |||||||| || ||||| ||||| |||||||| || ||
Sbjct 57785 TTCAGGCCAGCAATGGCACCTGCATCTTTAGTTGCTTGCCGTTGGGAATCGTTGAAATAT 57844
Query 7715 GCCGGGACCGTTACGACCGCGTCC 7738
|| || || ||||| || || |||
Sbjct 57845 GCTGGCACAGTTACTACGGCATCC 57868
Score = 132 bits (146), Expect = 6e-26
Identities = 218/312 (70%), Gaps = 2/312 (1%)
Strand=Plus/Plus
Query 7595 TTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACG-AAGACA 7653
||||| || | ||| || || ||||| || || |||||||| || |||||||| ||||||
Sbjct 52753 TTCTTGTCCAAACCATAAGCAATAGCAGCTGCTGTTGGTTCGTTGATAATACGCAAGACA 52812
Query 7654 GTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTA 7713
|| || |||||||| | | | |||||| || |||||||| || || || ||||| ||
Sbjct 52813 TTT-AGACCAGCAATTGCACCGGAATCTTTAGTGGCTTGTCGCTGTGAGTCATTAAAATA 52871
Query 7714 GGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATC 7773
|| ||||| || | || || ||| |||| | ||| ||| | | ||| || | ||
Sbjct 52872 TGCGGGGACTGTAATAACAGCATCCTTGACCGCATGACCCAGAAAAGCTTCAGCCGTCTC 52931
Query 7774 TTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAACTGTTTCGTTTCACC 7833
|||||||| | ||||||||| ||||||||||| | | ||| || || |||||
Sbjct 52932 CTTCATTTTAACCAAAACCATCGACGAAATCTCTTCTGGAGTAAAGGTCTTTGTCTCACC 52991
Query 7834 GTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGGGGATAACCTTATACGACCA 7893
|| | ||||| | | | |||||| | || || | | || ||| | | |||
Sbjct 52992 CTTGTATTCAACCTGCACTTTAGGTTTACCACCACCAGCATTCACTACTTTAAATGGCCA 53051
Query 7894 ATCTTTCATATC 7905
|| |||||||||
Sbjct 53052 ATGTTTCATATC 53063
Score = 120 bits (132), Expect = 4e-22
Identities = 182/259 (70%), Gaps = 0/259 (0%)
Strand=Plus/Plus
Query 7056 CCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAACATTT 7115
|||| || || || || ||||||||| |||||| || ||| |||| || || | |
Sbjct 51893 CCTCGTCCGGATTGATGCTTTTATTCAATTCTTTGCCAGAAAAGAAATCTGACAAGAGCT 51952
Query 7116 GTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGATT 7175
|| | ||||||||| || || |||||||| || | || || |||| |||| | |
Sbjct 51953 TCTGCACTTTCGGGATACGGGTTGATCCACCTACTAGCACAATGTCATGGACTTGGGCCT 52012
Query 7176 TATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTACGGAACAAGT 7235
| || ||||| | || || |||| ||| || || || |||||| | |||||| | |
Sbjct 52013 TGTCCATCTTAGCATCACGGAGTGCTTTCTCAACTGGATCCATAGTTGAACGGAAAAGAT 52072
Query 7236 CCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGT 7295
| ||| | ||||||||| || ||||| || || || |||||||| | || |||
Sbjct 52073 CAGCACATAATTCCTCAAAGCGAGCACGAGTGATATTGGTGTAGAAATCGATCCCCTCGA 52132
Query 7296 ATAACGAATCAATTTCAAT 7314
| |||||||||||||| ||
Sbjct 52133 ACAACGAATCAATTTCGAT 52151
Score = 113 bits (124), Expect = 6e-20
Identities = 185/267 (69%), Gaps = 0/267 (0%)
Strand=Plus/Plus
Query 6568 TTCATCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGA 6627
||| || ||| | || || ||||| || || || ||||| |||| || || || || ||
Sbjct 56164 TTCGTCATCAGCCTTGTATTTTTCAGCTTCCTGTACCATTCTTTCGATTTCGTCCTTTGA 56223
Query 6628 TAATCTCCCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTTC 6687
|| | || || || || ||||| || ||||| | | || || | || |||||||
Sbjct 56224 CAAACGGCCTTTGTCGTTAGTAATTGTTATCTTATTGTGCTTGCCTGTGGATTTATCTTG 56283
Query 6688 AGCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGT 6747
||| ||||||| ||||||||||||||||| ||| ||| |||| | |||||||||
Sbjct 56284 TGCAGAGACATTCAGAATACCATTTGCATCAATATCAAACGTTACTTCGATTTGTGGTAC 56343
Query 6748 ACCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGT 6807
||| | || || | ||||| || | | || ||| | || | | |||| || |
Sbjct 56344 ACCACGAGGGGCAGGCGGAATTCCAGAAAGTTCGAATTTGCCCAACAGGTTGTTGTCTTT 56403
Query 6808 CGCCTTCTTACGTTCACCTTCATAGAC 6834
|| | || ||| ||||||||||| ||
Sbjct 56404 CGTCATCGCACGCTCACCTTCATAAAC 56430
Score = 111 bits (122), Expect = 2e-19
Identities = 180/259 (69%), Gaps = 0/259 (0%)
Strand=Plus/Plus
Query 7056 CCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAACATTT 7115
||||||| || ||||| | || ||||||||||| || ||| |||| || | | ||
Sbjct 56841 CCTCATCCGGATTAATACTCTTGTTCAGTTCTTTGCCAGAAAAGAAATCGGAAAGTAATT 56900
Query 7116 GTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGATT 7175
|| | ||| || || || || || || || || ||||| || |||| || || | ||
Sbjct 56901 TCTGCACTTTTGGAATACGAGTAGAACCGCCAACTAAAACAATGTCATGCATTTGAGCTT 56960
Query 7176 TATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTACGGAACAAGT 7235
|||| ||||| | || || |||| ||| || || || |||||| | |||||||| |
Sbjct 56961 TATCCATCTTAGCATCACGTAGTGCTTTCTCAACTGGATCCATAGTTGAACGGAACAGAT 57020
Query 7236 CCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGT 7295
| ||| || || |||||||| ||||| || || || || |||||| || |||
Sbjct 57021 CAGCACAAAGCTCTTCAAAACGGGCACGAGTGATACTGGTGTAAAAATCAGTACCTTCGA 57080
Query 7296 ATAACGAATCAATTTCAAT 7314
| | |||||||| || ||
Sbjct 57081 AGAGTGAATCAATCTCGAT 57099
Score = 89.7 bits (98), Expect = 7e-13
Identities = 184/274 (67%), Gaps = 0/274 (0%)
Strand=Plus/Plus
Query 6568 TTCATCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGA 6627
|||||| || | || || || || || || || |||||| || || || || || ||
Sbjct 51175 TTCATCATCCGCCTTGTATTTCTCAGCTTCCTGTACCATCCGCTCGATCTCATCCTTTGA 51234
Query 6628 TAATCTCCCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTTC 6687
|| | || |||||||| ||||| ||||| || | ||| || | || ||||| |
Sbjct 51235 CAAACGTCCTTTATCATTGGTAATGGTAATTTTGTTTTGTTTGCCTGTGGATTTATCCTG 51294
Query 6688 AGCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGT 6747
|| ||||||| |||||| || ||||||| ||| || | || | |||||| ||
Sbjct 51295 GGCGGAAACATTCAGAATACCGTTGGCATCAATATCAAAGGTGACTTCAATTTGCGGCAC 51354
Query 6748 ACCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGT 6807
||| | || || | ||||| || | || || ||| ||||||| || | || || |
Sbjct 51355 ACCGCGAGGAGCAGGCGGAATTCCAGACAACTCGAATTTACCAAGCAAGTTATTGTCTTT 51414
Query 6808 CGCCTTCTTACGTTCACCTTCATAGACTTTAATT 6841
| | |||||||||||| || || | ||||
Sbjct 51415 GGTCAAAGCACGTTCACCTTCGTAAACCTAAATT 51448
>seq3379
Length=9770
Score = 89.7 bits (98), Expect = 7e-13
Identities = 115/159 (72%), Gaps = 0/159 (0%)
Strand=Plus/Plus
Query 184232 TTACCCCTAAGCGGAAAAACACCGTAATGATCACGACCAACAACTGAAAGACCAGCAATT 184291
||||| | ||| || || |||||||| | |||||| |||||||| ||||| | ||
Sbjct 1072 TTACCACGAAGAGGGAACACACCGTACTTATCACGTCCAACAACACCGAGACCTGAAACA 1131
Query 184292 GCAAGTGTTTTTGCAGAATCACCTTCGGTAATAATAAGAGTACACTTACCAGAGTGTGTG 184351
|| | ||| || ||||||||||| |||| |||||| ||| ||| | || | | |
Sbjct 1132 GCCAACAATTTGGCTGAATCACCTTCTGTAAGAATAAGCGTAGACTGTGCCGAATTTTTC 1191
Query 184352 GTACCGGCTTTATTGGCATCGTCGAGTTTTGGAATACCC 184390
||||| || | || ||||| || |||||||| | ||||
Sbjct 1192 GTACCAGCATCGTTAGCATCTTCTAGTTTTGGCACACCC 1230
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 635092270588200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |