Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Wuchereria_20bancrofti_20[genbank_20GCA_5F001555675.1_202016-02-09] 5,105 sequences; 90,325,107 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq5105 134 2e-26 seq3379 89.7 7e-13 >seq5105 Length=689533 Score = 134 bits (148), Expect = 2e-26 Identities = 116/144 (81%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 7595 TTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAG 7654 |||||||| ||||||||||| ||||| || || ||||||||||| || || |||||| | Sbjct 57725 TTCTTATCTAGACCGTACGCAATAGCAGCAGCGGTTGGTTCATTGATGATTCGAAGAACG 57784 Query 7655 TTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAG 7714 |||||||||||||| | | |||||||| || ||||| ||||| |||||||| || || Sbjct 57785 TTCAGGCCAGCAATGGCACCTGCATCTTTAGTTGCTTGCCGTTGGGAATCGTTGAAATAT 57844 Query 7715 GCCGGGACCGTTACGACCGCGTCC 7738 || || || ||||| || || ||| Sbjct 57845 GCTGGCACAGTTACTACGGCATCC 57868 Score = 132 bits (146), Expect = 6e-26 Identities = 218/312 (70%), Gaps = 2/312 (1%) Strand=Plus/Plus Query 7595 TTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACG-AAGACA 7653 ||||| || | ||| || || ||||| || || |||||||| || |||||||| |||||| Sbjct 52753 TTCTTGTCCAAACCATAAGCAATAGCAGCTGCTGTTGGTTCGTTGATAATACGCAAGACA 52812 Query 7654 GTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTA 7713 || || |||||||| | | | |||||| || |||||||| || || || ||||| || Sbjct 52813 TTT-AGACCAGCAATTGCACCGGAATCTTTAGTGGCTTGTCGCTGTGAGTCATTAAAATA 52871 Query 7714 GGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATC 7773 || ||||| || | || || ||| |||| | ||| ||| | | ||| || | || Sbjct 52872 TGCGGGGACTGTAATAACAGCATCCTTGACCGCATGACCCAGAAAAGCTTCAGCCGTCTC 52931 Query 7774 TTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAACTGTTTCGTTTCACC 7833 |||||||| | ||||||||| ||||||||||| | | ||| || || ||||| Sbjct 52932 CTTCATTTTAACCAAAACCATCGACGAAATCTCTTCTGGAGTAAAGGTCTTTGTCTCACC 52991 Query 7834 GTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGGGGATAACCTTATACGACCA 7893 || | ||||| | | | |||||| | || || | | || ||| | | ||| Sbjct 52992 CTTGTATTCAACCTGCACTTTAGGTTTACCACCACCAGCATTCACTACTTTAAATGGCCA 53051 Query 7894 ATCTTTCATATC 7905 || ||||||||| Sbjct 53052 ATGTTTCATATC 53063 Score = 120 bits (132), Expect = 4e-22 Identities = 182/259 (70%), Gaps = 0/259 (0%) Strand=Plus/Plus Query 7056 CCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAACATTT 7115 |||| || || || || ||||||||| |||||| || ||| |||| || || | | Sbjct 51893 CCTCGTCCGGATTGATGCTTTTATTCAATTCTTTGCCAGAAAAGAAATCTGACAAGAGCT 51952 Query 7116 GTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGATT 7175 || | ||||||||| || || |||||||| || | || || |||| |||| | | Sbjct 51953 TCTGCACTTTCGGGATACGGGTTGATCCACCTACTAGCACAATGTCATGGACTTGGGCCT 52012 Query 7176 TATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTACGGAACAAGT 7235 | || ||||| | || || |||| ||| || || || |||||| | |||||| | | Sbjct 52013 TGTCCATCTTAGCATCACGGAGTGCTTTCTCAACTGGATCCATAGTTGAACGGAAAAGAT 52072 Query 7236 CCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGT 7295 | ||| | ||||||||| || ||||| || || || |||||||| | || ||| Sbjct 52073 CAGCACATAATTCCTCAAAGCGAGCACGAGTGATATTGGTGTAGAAATCGATCCCCTCGA 52132 Query 7296 ATAACGAATCAATTTCAAT 7314 | |||||||||||||| || Sbjct 52133 ACAACGAATCAATTTCGAT 52151 Score = 113 bits (124), Expect = 6e-20 Identities = 185/267 (69%), Gaps = 0/267 (0%) Strand=Plus/Plus Query 6568 TTCATCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGA 6627 ||| || ||| | || || ||||| || || || ||||| |||| || || || || || Sbjct 56164 TTCGTCATCAGCCTTGTATTTTTCAGCTTCCTGTACCATTCTTTCGATTTCGTCCTTTGA 56223 Query 6628 TAATCTCCCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTTC 6687 || | || || || || ||||| || ||||| | | || || | || ||||||| Sbjct 56224 CAAACGGCCTTTGTCGTTAGTAATTGTTATCTTATTGTGCTTGCCTGTGGATTTATCTTG 56283 Query 6688 AGCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGT 6747 ||| ||||||| ||||||||||||||||| ||| ||| |||| | ||||||||| Sbjct 56284 TGCAGAGACATTCAGAATACCATTTGCATCAATATCAAACGTTACTTCGATTTGTGGTAC 56343 Query 6748 ACCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGT 6807 ||| | || || | ||||| || | | || ||| | || | | |||| || | Sbjct 56344 ACCACGAGGGGCAGGCGGAATTCCAGAAAGTTCGAATTTGCCCAACAGGTTGTTGTCTTT 56403 Query 6808 CGCCTTCTTACGTTCACCTTCATAGAC 6834 || | || ||| ||||||||||| || Sbjct 56404 CGTCATCGCACGCTCACCTTCATAAAC 56430 Score = 111 bits (122), Expect = 2e-19 Identities = 180/259 (69%), Gaps = 0/259 (0%) Strand=Plus/Plus Query 7056 CCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAACATTT 7115 ||||||| || ||||| | || ||||||||||| || ||| |||| || | | || Sbjct 56841 CCTCATCCGGATTAATACTCTTGTTCAGTTCTTTGCCAGAAAAGAAATCGGAAAGTAATT 56900 Query 7116 GTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGATT 7175 || | ||| || || || || || || || || ||||| || |||| || || | || Sbjct 56901 TCTGCACTTTTGGAATACGAGTAGAACCGCCAACTAAAACAATGTCATGCATTTGAGCTT 56960 Query 7176 TATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTACGGAACAAGT 7235 |||| ||||| | || || |||| ||| || || || |||||| | |||||||| | Sbjct 56961 TATCCATCTTAGCATCACGTAGTGCTTTCTCAACTGGATCCATAGTTGAACGGAACAGAT 57020 Query 7236 CCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGT 7295 | ||| || || |||||||| ||||| || || || || |||||| || ||| Sbjct 57021 CAGCACAAAGCTCTTCAAAACGGGCACGAGTGATACTGGTGTAAAAATCAGTACCTTCGA 57080 Query 7296 ATAACGAATCAATTTCAAT 7314 | | |||||||| || || Sbjct 57081 AGAGTGAATCAATCTCGAT 57099 Score = 89.7 bits (98), Expect = 7e-13 Identities = 184/274 (67%), Gaps = 0/274 (0%) Strand=Plus/Plus Query 6568 TTCATCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGA 6627 |||||| || | || || || || || || || |||||| || || || || || || Sbjct 51175 TTCATCATCCGCCTTGTATTTCTCAGCTTCCTGTACCATCCGCTCGATCTCATCCTTTGA 51234 Query 6628 TAATCTCCCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTTC 6687 || | || |||||||| ||||| ||||| || | ||| || | || ||||| | Sbjct 51235 CAAACGTCCTTTATCATTGGTAATGGTAATTTTGTTTTGTTTGCCTGTGGATTTATCCTG 51294 Query 6688 AGCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGT 6747 || ||||||| |||||| || ||||||| ||| || | || | |||||| || Sbjct 51295 GGCGGAAACATTCAGAATACCGTTGGCATCAATATCAAAGGTGACTTCAATTTGCGGCAC 51354 Query 6748 ACCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGT 6807 ||| | || || | ||||| || | || || ||| ||||||| || | || || | Sbjct 51355 ACCGCGAGGAGCAGGCGGAATTCCAGACAACTCGAATTTACCAAGCAAGTTATTGTCTTT 51414 Query 6808 CGCCTTCTTACGTTCACCTTCATAGACTTTAATT 6841 | | |||||||||||| || || | |||| Sbjct 51415 GGTCAAAGCACGTTCACCTTCGTAAACCTAAATT 51448 >seq3379 Length=9770 Score = 89.7 bits (98), Expect = 7e-13 Identities = 115/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 184232 TTACCCCTAAGCGGAAAAACACCGTAATGATCACGACCAACAACTGAAAGACCAGCAATT 184291 ||||| | ||| || || |||||||| | |||||| |||||||| ||||| | || Sbjct 1072 TTACCACGAAGAGGGAACACACCGTACTTATCACGTCCAACAACACCGAGACCTGAAACA 1131 Query 184292 GCAAGTGTTTTTGCAGAATCACCTTCGGTAATAATAAGAGTACACTTACCAGAGTGTGTG 184351 || | ||| || ||||||||||| |||| |||||| ||| ||| | || | | | Sbjct 1132 GCCAACAATTTGGCTGAATCACCTTCTGTAAGAATAAGCGTAGACTGTGCCGAATTTTTC 1191 Query 184352 GTACCGGCTTTATTGGCATCGTCGAGTTTTGGAATACCC 184390 ||||| || | || ||||| || |||||||| | |||| Sbjct 1192 GTACCAGCATCGTTAGCATCTTCTAGTTTTGGCACACCC 1230 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635092270588200