Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Wuchereria_20bancrofti_20[genbank_20GCA_5F001555675.1_202016-02-09] 5,105 sequences; 90,325,107 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq4130 156 9e-33 seq4574 147 5e-30 seq4330 105 1e-17 seq4209 95.1 3e-14 seq3175 95.1 3e-14 >seq4130 Length=21019 Score = 156 bits (172), Expect = 9e-33 Identities = 161/211 (76%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| ||||| || || ||||| || |||||||||||||||| | || | || || || Sbjct 11846 AACTAGGTGCAGCGTCGACTCCTTCTGAATATTGTAATCGGACAATGTACGACCGTCCTC 11905 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 |||||||| || || ||||| ||||| || || ||||| ||||||||||| ||||| || Sbjct 11906 CAGCTGCTTGCCCGCAAAGATCAGTCGCTGCTGATCTGGTGGAATGCCTTCCTTGTCCTG 11965 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 |||||| |||||||| || || || || ||| |||||||| || || | || || Sbjct 11966 GATTTTTGCTTTGACGTTTTCGATAGTATCAGAAGCCTCCACTTCGAGTGTTATGGTTTT 12025 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 || |||||||| ||||| || | ||||||| Sbjct 12026 ACCCGTCAAAGTCTTTACAAAAATTTGCATT 12056 >seq4574 Length=39733 Score = 147 bits (162), Expect = 5e-30 Identities = 159/211 (75%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| ||||| || || ||||| || |||||||| ||||||| | || | || || || Sbjct 20833 AACCAGGTGCAGCGTCGACTCCTTCTGAATATTATAATCGGACAATGTACGACCGTCCTC 20892 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 |||||||| || || ||||| ||||| || || ||||| ||||||||||| ||||| || Sbjct 20893 CAGCTGCTTGCCCGCAAAGATCAGTCGCTGCTGATCTGGTGGAATGCCTTCCTTGTCCTG 20952 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 || ||| |||||||| || || || || ||| |||||||| || || | ||||| Sbjct 20953 GATCTTTGCTTTGACGTTTTCGATAGTATCAGAAGCCTCCACTTCTAGTGTTATGGTCTT 21012 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 || |||||||| ||||| || | |||||| Sbjct 21013 ACCCGTCAAAGTCTTTACAAAAATCTGCATT 21043 Score = 107 bits (118), Expect = 4e-18 Identities = 109/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 194999 TACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTT 195058 ||||||| || ||||| || || |||||||| || || || || |||||||| |||||| Sbjct 22206 TACCTGCAAAAATAAGGCGCTGCTGGTCTGGCGGGATACCCTCCTTGTCTTGTATTTTTG 22265 Query 195059 GCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCA 195118 || || || ||||| ||||| ||| ||||||||||| || | || ||||| |||| Sbjct 22266 CTTTAACATTTTCAATTGTGTCTGAAGCCTCCACTTCAAGAGTGATTGTTTTTCCAGTCA 22325 Query 195119 AAGTTTTTACGAACACTTGCAT 195140 ||||| ||||| | |||||| Sbjct 22326 GTGTTTTCACGAAGATTTGCAT 22347 >seq4330 Length=27005 Score = 105 bits (116), Expect = 1e-17 Identities = 108/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 195000 ACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTG 195059 |||||| || ||||||||||| || || || ||||| || || || || |||||||| Sbjct 21275 ACCTGCAAAAATAAGTCGTTGCTGATCAGGTGGAATACCCTCCTTATCCTGAATTTTAGT 21216 Query 195060 CTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAA 195119 ||| || |||||||| || || || ||| || |||||||||| ||||||||| || || Sbjct 21215 CTTCACATTCTCAATAGTATCGGACGATTCTACCTCAAGGGTAATCGTCTTTCCAGTTAA 21156 Query 195120 AGTTTTTACGAACACTTGCAT 195140 ||||| || || | ||||| Sbjct 21155 CGTTTTCACAAATATCTGCAT 21135 >seq4209 Length=23298 Score = 95.1 bits (104), Expect = 3e-14 Identities = 106/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 194999 TACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTT 195058 ||||||| || || | || || || ||||| || |||||||||||||| || ||||| Sbjct 2528 TACCTGCAAAAATCAACCGCTGCTGATCTGGGGGTATGCCTTCTTTGTCCTGTATTTTCG 2587 Query 195059 GCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCA 195118 || || |||||||| || ||||| ||| || ||||| |||| ||| || || || | Sbjct 2588 CTTTTACATTCTCAATTGTATCCGAGGATTCGACCTCAAGCGTAATCGTTTTACCAGTTA 2647 Query 195119 AAGTTTTTACGAACACTTGCAT 195140 |||| || || || | |||||| Sbjct 2648 AAGTCTTGACAAAAATTTGCAT 2669 >seq3175 Length=8402 Score = 95.1 bits (104), Expect = 3e-14 Identities = 106/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 194999 TACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTT 195058 ||||||| || || | || || || ||||| || |||||||||||||| || ||||| Sbjct 5254 TACCTGCAAAAATCAACCGCTGCTGATCTGGGGGTATGCCTTCTTTGTCCTGTATTTTCG 5195 Query 195059 GCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCA 195118 || || |||||||| || ||||| ||| || ||||| |||| ||| || || || | Sbjct 5194 CTTTTACATTCTCAATTGTATCCGAGGATTCGACCTCAAGCGTAATCGTTTTACCAGTTA 5135 Query 195119 AAGTTTTTACGAACACTTGCAT 195140 |||| || || || | |||||| Sbjct 5134 AAGTCTTGACAAAAATTTGCAT 5113 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109409031235535