Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Wuchereria_20bancrofti_20[genbank_20GCA_5F001555675.1_202016-02-09] 5,105 sequences; 90,325,107 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq5105 158 1e-32 seq4026 143 2e-28 seq4209 86.0 5e-11 seq3175 86.0 5e-11 >seq5105 Length=689533 Score = 158 bits (174), Expect = 1e-32 Identities = 251/357 (70%), Gaps = 5/357 (1%) Strand=Plus/Minus Query 550175 ATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCAGAT 550234 |||| || |||||||| | ||||| | | ||| ||||| | || || | ||| Sbjct 53120 ATTTCAGACGCTAAACGACTGATTGGTCGTAAGTTTGATGATGGATCAGTGCAATCGGAT 53061 Query 550235 ATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGA---AAACCTTATATTGAAGCT 550291 ||||| |||||||| || || | || |||| | ||| |||||| | | || || | Sbjct 53060 ATGAAACATTGGCCATTTAAAGTAGTGAATGCTGGTGGTGGTAAACCTAA-AGTGCAGGT 53002 Query 550292 ACTCATGAAGGATCTGTTAAACAATTTT-CACCAGAACAAATTTCATCTATGGTTTTAAT 550350 |||| | | ||| | ||| | |||||| | ||||| || |||||||| | Sbjct 53001 TGAATACAAGGGTGAGACAAAGACCTTTACTCCAGAAGAGATTTCGTCGATGGTTTTGGT 52942 Query 550351 GAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATAAC 550410 |||||||| | || || |||||| | ||||| | || | |||||| || || || Sbjct 52941 TAAAATGAAGGAGACGGCTGAAGCTTTTCTGGGTCATGCGGTCAAGGATGCTGTTATTAC 52882 Query 550411 TGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGC 550470 || || |||||||||||||||||||| || ||||| ||||||||| | || ||||| Sbjct 52881 AGTCCCCGCATATTTTAATGACTCACAGCGACAAGCCACTAAAGATTCCGGTGCAATTGC 52822 Query 550471 TGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGG 550527 ||| || ||||| | ||||||||||| ||||| || || ||||| |||| ||||| Sbjct 52821 TGGTCTAAATGTCTTGCGTATTATCAACGAACCAACAGCAGCTGCTATTGCTTATGG 52765 Score = 132 bits (146), Expect = 4e-25 Identities = 114/141 (81%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 550396 GGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGA 550455 |||||| ||| ||||||| ||||||||||| || || || ||||| ||||| |||||||| Sbjct 57868 GGATGCCGTAGTAACTGTGCCAGCATATTTCAACGATTCCCAACGGCAAGCAACTAAAGA 57809 Query 550456 TGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGC 550515 ||| || |||||||| || || |||||||| || ||||||||||| || |||||||| Sbjct 57808 TGCAGGTGCCATTGCTGGCCTGAACGTTCTTCGAATCATCAATGAACCAACCGCTGCTGC 57749 Query 550516 ACTTGCATATGGACTTGATAA 550536 |||| || || || ||||| Sbjct 57748 TATTGCGTACGGTCTAGATAA 57728 Score = 91.5 bits (100), Expect = 1e-12 Identities = 119/165 (72%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 552437 AATTCAAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTT 552496 |||| | ||| ||||| ||| | || || ||||| ||||| ||||||| || Sbjct 51448 AATTTAGGTTTACGAAGGTGAACGTGCTTTGACCAAAGACAATAACTTGCTTGGTAAATT 51389 Query 552497 TAATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGA 552556 | || || ||||| ||||||||||| || || |||||||||||||| || || || Sbjct 51388 CGAGTTGTCTGGAATTCCGCCTGCTCCTCGCGGTGTGCCGCAAATTGAAGTCACCTTTGA 51329 Query 552557 TATCGATGCCAATGGAATTTTGAATGTGACTGCTTGTGATAAATC 552601 ||| |||||||| || ||| ||||||| | || |||||||| Sbjct 51328 TATTGATGCCAACGGTATTCTGAATGTTTCCGCCCAGGATAAATC 51284 Score = 87.8 bits (96), Expect = 1e-11 Identities = 117/163 (72%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 552220 AGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTCTGGACAAACTGATGAAA 552279 |||| || || ||||| || ||| | || ||||||||||||||||| | | ||| Sbjct 51768 AGGCCGTGGCGTATGGCGCAGCAGTGCAGGCAGCTATTCTTTCTGGTGATAAGTCGGAAG 51709 Query 552280 AACTACAAAATATTGTACTTGTAGATGTTACTCCTCTATCTCTTGGTTTAGAAACAGTTG 552339 ||||| || | |||| | || || | || || || |||||| | ||||||| || Sbjct 51708 CCGTACAAGATTTGTTACTGCTTGACGTCGCACCGCTTTCACTTGGTATTGAAACAGCTG 51649 Query 552340 GAGGTATTATGACTAATCTTATCGATAGAAATACTACTATTCC 552382 | ||| |||||||| |||||| | ||||||| |||||||| Sbjct 51648 GGGGTGTTATGACTGCGCTTATCAAGCGAAATACCACTATTCC 51606 >seq4026 Length=18768 Score = 143 bits (158), Expect = 2e-28 Identities = 162/217 (75%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 550320 CACCAGAACAAATTTCATCTATGGTTTTAATGAAAATGAAACAAACAGCCAGTGCTTTTG 550379 |||| || | |||||| | |||||| | |||||||| ||| || || | | Sbjct 9826 CACCTGAGGAGATTTCAGCAATGGTTCTTGGCAAAATGAAGGAAATTGCGGAAGCATATC 9767 Query 550380 TTGGTCAAGAAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAAC 550439 | || | ||||| | ||||||| | || ||||| || || |||||||| |||||| Sbjct 9766 TAGGAAAGGAAGTAAAACATGCAGTCGTTACGGTACCTGCTTACTTTAATGATGCACAAC 9707 Query 550440 GTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATG 550499 |||||||||| |||||||| || |||||| || || |||||| ||||||| ||||||| Sbjct 9706 GTCAAGCTACCAAAGATGCAGGTACTATTGCCGGTCTCAATGTTGTTCGTATCATCAATG 9647 Query 550500 AACCTACTGCTGCTGCACTTGCATATGGACTTGATAA 550536 ||||||| ||||| || ||||||||||| | ||||| Sbjct 9646 AACCTACAGCTGCCGCTATTGCATATGGATTGGATAA 9610 Score = 113 bits (124), Expect = 4e-19 Identities = 168/237 (71%), Gaps = 6/237 (3%) Strand=Plus/Minus Query 550022 AGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTTGAAATTATTGCCAATGATCAAGGTAAC 550081 || |||||||| || | ||||||| ||| ||||| ||||| ||||| |||||||| Sbjct 10217 AGCTGTGTTGGAGTCTATAAAAATGGACGAGTGGAAATCATTGCAAATGAACAAGGTAAT 10158 Query 550082 AGAACTACTCCATCTTATGTTTCTTTCACGGA--AAC----TGAACATTTAGTTGGTGAT 550135 ||| || ||||| || ||| | ||||| | || ||| | | | |||||||| Sbjct 10157 CGAATCACGCCATCATACGTTGCATTCACTGGTGAAGGCGGTGAGCGTCTTATTGGTGAT 10098 Query 550136 GCAGCAAAATATCAAGCCACTGGTAATCCTACCAATACTATTTTTGATGCTAAACGTTTA 550195 ||||| ||| |||| || ||||| |||||| | ||||||| ||||||| | Sbjct 10097 GCAGCCAAAAATCAGTTAACAACGAATCCGGAAAATACTGTCTTTGATGTTAAACGTCTG 10038 Query 550196 ATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCAGATATGAAGCATTGGCCTTTC 550252 ||||| || | || ||||| ||||| ||| |||||| || |||||||||||| Sbjct 10037 ATTGGCCGAGAGTACAAGGATTCAACTGTACAGCAAGATATTAAACATTGGCCTTTC 9981 Score = 93.3 bits (102), Expect = 3e-13 Identities = 130/180 (72%), Gaps = 8/180 (4%) Strand=Plus/Minus Query 552205 GTGTTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTCTG 552264 || ||||||||||||| ||||| || |||||||| ||| |||| || | | || |||| | Sbjct 8469 GTATTAATCCAGATGAAGCTGTGGCATATGGTGCAGCAGTTCAGGCTGGTGTTATTTCGG 8410 Query 552265 GACAAACTGATGAAA-AACTACAAAATATTGTACTTGTAGATGTTACTCCTCTATCTCTT 552323 | ||| |||| ||| | |||||| | ||||||| | |||| | | ||| Sbjct 8409 G------TGAAGAAAGTACT-GGTGACATTGTATTGTTAGATGTGAATCCTTTGACCCTT 8357 Query 552324 GGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTATTCCT 552383 ||| | |||||| |||| ||| ||||||| || || || | ||||| ||| ||||||| Sbjct 8356 GGTATTGAAACAATTGGCGGTGTTATGACCAAACTCATTCAGAGAAACACTGTTATTCCT 8297 Score = 89.7 bits (98), Expect = 4e-12 Identities = 94/124 (76%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 361721 GCAGCTGTTGGTTCGTTAATTATTTTAATAACATTGAGTCCCGCTATTTTTGATGCATCT 361780 |||||||| ||||| || || || || ||||||||| || || || | ||||||| Sbjct 9634 GCAGCTGTAGGTTCATTGATGATACGAACAACATTGAGACCGGCAATAGTACCTGCATCT 9693 Query 361781 AAAGTGGCTTGACGTTGTGCATCATTAAAATATGCAGGAACAGTAATCACTGCTTTTTCA 361840 || ||||||||||||||||||||||| || ||||| || |||| ||||| | || Sbjct 9694 TTGGTAGCTTGACGTTGTGCATCATTAAAGTAAGCAGGTACCGTAACGACTGCATGTTTT 9753 Query 361841 ACTT 361844 |||| Sbjct 9754 ACTT 9757 >seq4209 Length=23298 Score = 86.0 bits (94), Expect = 5e-11 Identities = 105/141 (74%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 563335 CCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGT 563394 || |||||||| | | |||||||| || || || |||||||| || || ||||| | Sbjct 2530 CCTGCAAAAATCAACCGCTGCTGATCTGGGGGTATGCCTTCTTTGTCCTGTATTTTCGCT 2589 Query 563395 TTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAGTAACAGTTTTACCAGTAAG 563453 ||||| |||||||||||| | | || | | || || |||| ||||||||||| | Sbjct 2590 TTTACATTCTCAATTGTATCCGAG-GATTCGACCTCAAGCGTAATCGTTTTACCAGTTAA 2648 Query 563454 AGTTTTAACGAAAATTTGCAT 563474 ||| || || ||||||||||| Sbjct 2649 AGTCTTGACAAAAATTTGCAT 2669 >seq3175 Length=8402 Score = 86.0 bits (94), Expect = 5e-11 Identities = 105/141 (74%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 563335 CCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGT 563394 || |||||||| | | |||||||| || || || |||||||| || || ||||| | Sbjct 5252 CCTGCAAAAATCAACCGCTGCTGATCTGGGGGTATGCCTTCTTTGTCCTGTATTTTCGCT 5193 Query 563395 TTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAGTAACAGTTTTACCAGTAAG 563453 ||||| |||||||||||| | | || | | || || |||| ||||||||||| | Sbjct 5192 TTTACATTCTCAATTGTATCCGAG-GATTCGACCTCAAGCGTAATCGTTTTACCAGTTAA 5134 Query 563454 AGTTTTAACGAAAATTTGCAT 563474 ||| || || ||||||||||| Sbjct 5133 AGTCTTGACAAAAATTTGCAT 5113 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029026024576450