Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Wuchereria_20bancrofti_20[genbank_20GCA_5F001555675.1_202016-02-09] 5,105 sequences; 90,325,107 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq4130 131 1e-25 seq4574 118 8e-22 seq4209 118 8e-22 seq3175 118 8e-22 seq4330 102 6e-17 >seq4130 Length=21019 Score = 131 bits (144), Expect = 1e-25 Identities = 155/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 101260 AACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTC 101319 ||||| || || || || || || || ||||||||||||| | || | | || || Sbjct 11846 AACTAGGTGCAGCGTCGACTCCTTCTGAATATTGTAATCGGACAATGTACGACCGTCCTC 11905 Query 101320 CAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTG 101379 || ||||| || ||||| |||| ||||| ||||| || ||||||||||| || || || Sbjct 11906 CAGCTGCTTGCCCGCAAAGATCAGTCGCTGCTGATCTGGTGGAATGCCTTCCTTGTCCTG 11965 Query 101380 AATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTT 101439 |||||| ||| || |||| | ||| ||||| | |||||||| || || | ||||| Sbjct 11966 GATTTTTGCTTTGACGTTTTCGATAGTATCAGAAGCCTCCACTTCGAGTGTTATGGTTTT 12025 Query 101440 GCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || ||||| |||||||| || ||||| Sbjct 12026 ACCCGTCAAAGTCTTTACAAAAATTTGCAT 12055 Score = 111 bits (122), Expect = 1e-19 Identities = 112/146 (77%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 101325 GCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTT 101384 ||||||| ||||| || | ||||| ||||| || || || ||||||||||| ||||| | Sbjct 12546 GCTTACCAGCAAAAATAAGGCGCTGCTGATCCGGAGGGATCCCTTCTTTATCCTGAATCT 12605 Query 101385 TTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGG 101444 | |||||| |||| | |||||||| | || ||||| | |||| ||| ||||| | Sbjct 12606 TGGCCTTTACATTTTCGATTGTGTCAGAAGCCTCAACTTCTAAGGTGATCGTCTTGCCCG 12665 Query 101445 TTAAAGTTTTTACAAATATCTGCATG 101470 | || ||||||||||| || |||||| Sbjct 12666 TCAATGTTTTTACAAAAATTTGCATG 12691 >seq4574 Length=39733 Score = 118 bits (130), Expect = 8e-22 Identities = 148/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || || || || || || || ||||| ||||||| | || | | || |||| ||| Sbjct 20840 TGCAGCGTCGACTCCTTCTGAATATTATAATCGGACAATGTACGACCGTCCTCCAGCTGC 20899 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || ||||| |||| ||||| ||||| || ||||||||||| || || || || ||| Sbjct 20900 TTGCCCGCAAAGATCAGTCGCTGCTGATCTGGTGGAATGCCTTCCTTGTCCTGGATCTTT 20959 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 ||| || |||| | ||| ||||| | |||||||| || || | || || || || Sbjct 20960 GCTTTGACGTTTTCGATAGTATCAGAAGCCTCCACTTCTAGTGTTATGGTCTTACCCGTC 21019 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 ||||| |||||||| |||||||| Sbjct 21020 AAAGTCTTTACAAAAATCTGCAT 21042 Score = 105 bits (116), Expect = 5e-18 Identities = 111/146 (76%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 101325 GCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTT 101384 ||||||| ||||| || | ||||| ||||| || ||||| ||||||||||| ||||| | Sbjct 21533 GCTTACCAGCAAAAATGAGGCGCTGCTGATCCGGAGGAATCCCTTCTTTATCCTGAATCT 21592 Query 101385 TTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGG 101444 | || ||| |||| | || ||||| | || ||||| | |||| ||| ||||| | Sbjct 21593 TGGCCTTCACATTTTCGATTGTATCAGAAGCCTCAACTTCTAAGGTGATCGTCTTGCCCG 21652 Query 101445 TTAAAGTTTTTACAAATATCTGCATG 101470 | || ||||||||||| || |||||| Sbjct 21653 TCAATGTTTTTACAAAAATTTGCATG 21678 Score = 105 bits (116), Expect = 5e-18 Identities = 112/148 (76%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 101328 TACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTT 101387 |||||||||| || | ||||| || || ||||| || || || || ||||| |||||| Sbjct 22206 TACCTGCAAAAATAAGGCGCTGCTGGTCTGGCGGGATACCCTCCTTGTCTTGTATTTTTG 22265 Query 101388 GTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTA 101447 ||| ||| |||| | ||||| || | |||||||||||||||| ||||| || || | Sbjct 22266 CTTTAACATTTTCAATTGTGTCTGAAGCCTCCACTTCAAGAGTGATTGTTTTTCCAGTCA 22325 Query 101448 AAGTTTTTACAAATATCTGCATGGTTAC 101475 ||||| || || || |||||| |||| Sbjct 22326 GTGTTTTCACGAAGATTTGCATGTTTAC 22353 >seq4209 Length=23298 Score = 118 bits (130), Expect = 8e-22 Identities = 113/145 (78%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 101328 TACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTT 101387 |||||||||| ||||| ||||| ||||| || || ||||||||||| || || ||||| Sbjct 2528 TACCTGCAAAAATCAACCGCTGCTGATCTGGGGGTATGCCTTCTTTGTCCTGTATTTTCG 2587 Query 101388 GTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTA 101447 ||||||| | || | || || || | ||| || ||||| || | |||||| || |||| Sbjct 2588 CTTTTACATTCTCAATTGTATCCGAGGATTCGACCTCAAGCGTAATCGTTTTACCAGTTA 2647 Query 101448 AAGTTTTTACAAATATCTGCATGGT 101472 |||| || ||||| || |||||||| Sbjct 2648 AAGTCTTGACAAAAATTTGCATGGT 2672 >seq3175 Length=8402 Score = 118 bits (130), Expect = 8e-22 Identities = 113/145 (78%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 101328 TACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTT 101387 |||||||||| ||||| ||||| ||||| || || ||||||||||| || || ||||| Sbjct 5254 TACCTGCAAAAATCAACCGCTGCTGATCTGGGGGTATGCCTTCTTTGTCCTGTATTTTCG 5195 Query 101388 GTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTA 101447 ||||||| | || | || || || | ||| || ||||| || | |||||| || |||| Sbjct 5194 CTTTTACATTCTCAATTGTATCCGAGGATTCGACCTCAAGCGTAATCGTTTTACCAGTTA 5135 Query 101448 AAGTTTTTACAAATATCTGCATGGT 101472 |||| || ||||| || |||||||| Sbjct 5134 AAGTCTTGACAAAAATTTGCATGGT 5110 >seq4330 Length=27005 Score = 102 bits (112), Expect = 6e-17 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 101329 ACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTG 101388 ||||||||| || | || || ||||| || ||||| || || ||||| |||||||| Sbjct 21275 ACCTGCAAAAATAAGTCGTTGCTGATCAGGTGGAATACCCTCCTTATCCTGAATTTTAGT 21216 Query 101389 TTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAA 101448 || ||| | || | ||| || |||| ||| || ||||| || | ||| || || ||||| Sbjct 21215 CTTCACATTCTCAATAGTATCGGACGATTCTACCTCAAGGGTAATCGTCTTTCCAGTTAA 21156 Query 101449 AGTTTTTACAAATATCTGCAT 101469 ||||| |||||||||||||| Sbjct 21155 CGTTTTCACAAATATCTGCAT 21135 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396253744672485