Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Wuchereria_20bancrofti_20[genbank_20GCA_5F001555675.1_202016-02-09]
5,105 sequences; 90,325,107 total letters
Query= NC_018504.1
Length=123876
Score E
Sequences producing significant alignments: (Bits) Value
seq4130 131 1e-25
seq4574 118 8e-22
seq4209 118 8e-22
seq3175 118 8e-22
seq4330 102 6e-17
>seq4130
Length=21019
Score = 131 bits (144), Expect = 1e-25
Identities = 155/210 (74%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 101260 AACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTC 101319
||||| || || || || || || || ||||||||||||| | || | | || ||
Sbjct 11846 AACTAGGTGCAGCGTCGACTCCTTCTGAATATTGTAATCGGACAATGTACGACCGTCCTC 11905
Query 101320 CAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTG 101379
|| ||||| || ||||| |||| ||||| ||||| || ||||||||||| || || ||
Sbjct 11906 CAGCTGCTTGCCCGCAAAGATCAGTCGCTGCTGATCTGGTGGAATGCCTTCCTTGTCCTG 11965
Query 101380 AATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTT 101439
|||||| ||| || |||| | ||| ||||| | |||||||| || || | |||||
Sbjct 11966 GATTTTTGCTTTGACGTTTTCGATAGTATCAGAAGCCTCCACTTCGAGTGTTATGGTTTT 12025
Query 101440 GCCGGTTAAAGTTTTTACAAATATCTGCAT 101469
|| || ||||| |||||||| || |||||
Sbjct 12026 ACCCGTCAAAGTCTTTACAAAAATTTGCAT 12055
Score = 111 bits (122), Expect = 1e-19
Identities = 112/146 (77%), Gaps = 0/146 (0%)
Strand=Plus/Plus
Query 101325 GCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTT 101384
||||||| ||||| || | ||||| ||||| || || || ||||||||||| ||||| |
Sbjct 12546 GCTTACCAGCAAAAATAAGGCGCTGCTGATCCGGAGGGATCCCTTCTTTATCCTGAATCT 12605
Query 101385 TTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGG 101444
| |||||| |||| | |||||||| | || ||||| | |||| ||| ||||| |
Sbjct 12606 TGGCCTTTACATTTTCGATTGTGTCAGAAGCCTCAACTTCTAAGGTGATCGTCTTGCCCG 12665
Query 101445 TTAAAGTTTTTACAAATATCTGCATG 101470
| || ||||||||||| || ||||||
Sbjct 12666 TCAATGTTTTTACAAAAATTTGCATG 12691
>seq4574
Length=39733
Score = 118 bits (130), Expect = 8e-22
Identities = 148/203 (73%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326
|| || || || || || || ||||| ||||||| | || | | || |||| |||
Sbjct 20840 TGCAGCGTCGACTCCTTCTGAATATTATAATCGGACAATGTACGACCGTCCTCCAGCTGC 20899
Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386
|| || ||||| |||| ||||| ||||| || ||||||||||| || || || || |||
Sbjct 20900 TTGCCCGCAAAGATCAGTCGCTGCTGATCTGGTGGAATGCCTTCCTTGTCCTGGATCTTT 20959
Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446
||| || |||| | ||| ||||| | |||||||| || || | || || || ||
Sbjct 20960 GCTTTGACGTTTTCGATAGTATCAGAAGCCTCCACTTCTAGTGTTATGGTCTTACCCGTC 21019
Query 101447 AAAGTTTTTACAAATATCTGCAT 101469
||||| |||||||| ||||||||
Sbjct 21020 AAAGTCTTTACAAAAATCTGCAT 21042
Score = 105 bits (116), Expect = 5e-18
Identities = 111/146 (76%), Gaps = 0/146 (0%)
Strand=Plus/Plus
Query 101325 GCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTT 101384
||||||| ||||| || | ||||| ||||| || ||||| ||||||||||| ||||| |
Sbjct 21533 GCTTACCAGCAAAAATGAGGCGCTGCTGATCCGGAGGAATCCCTTCTTTATCCTGAATCT 21592
Query 101385 TTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGG 101444
| || ||| |||| | || ||||| | || ||||| | |||| ||| ||||| |
Sbjct 21593 TGGCCTTCACATTTTCGATTGTATCAGAAGCCTCAACTTCTAAGGTGATCGTCTTGCCCG 21652
Query 101445 TTAAAGTTTTTACAAATATCTGCATG 101470
| || ||||||||||| || ||||||
Sbjct 21653 TCAATGTTTTTACAAAAATTTGCATG 21678
Score = 105 bits (116), Expect = 5e-18
Identities = 112/148 (76%), Gaps = 0/148 (0%)
Strand=Plus/Plus
Query 101328 TACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTT 101387
|||||||||| || | ||||| || || ||||| || || || || ||||| ||||||
Sbjct 22206 TACCTGCAAAAATAAGGCGCTGCTGGTCTGGCGGGATACCCTCCTTGTCTTGTATTTTTG 22265
Query 101388 GTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTA 101447
||| ||| |||| | ||||| || | |||||||||||||||| ||||| || || |
Sbjct 22266 CTTTAACATTTTCAATTGTGTCTGAAGCCTCCACTTCAAGAGTGATTGTTTTTCCAGTCA 22325
Query 101448 AAGTTTTTACAAATATCTGCATGGTTAC 101475
||||| || || || |||||| ||||
Sbjct 22326 GTGTTTTCACGAAGATTTGCATGTTTAC 22353
>seq4209
Length=23298
Score = 118 bits (130), Expect = 8e-22
Identities = 113/145 (78%), Gaps = 0/145 (0%)
Strand=Plus/Plus
Query 101328 TACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTT 101387
|||||||||| ||||| ||||| ||||| || || ||||||||||| || || |||||
Sbjct 2528 TACCTGCAAAAATCAACCGCTGCTGATCTGGGGGTATGCCTTCTTTGTCCTGTATTTTCG 2587
Query 101388 GTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTA 101447
||||||| | || | || || || | ||| || ||||| || | |||||| || ||||
Sbjct 2588 CTTTTACATTCTCAATTGTATCCGAGGATTCGACCTCAAGCGTAATCGTTTTACCAGTTA 2647
Query 101448 AAGTTTTTACAAATATCTGCATGGT 101472
|||| || ||||| || ||||||||
Sbjct 2648 AAGTCTTGACAAAAATTTGCATGGT 2672
>seq3175
Length=8402
Score = 118 bits (130), Expect = 8e-22
Identities = 113/145 (78%), Gaps = 0/145 (0%)
Strand=Plus/Minus
Query 101328 TACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTT 101387
|||||||||| ||||| ||||| ||||| || || ||||||||||| || || |||||
Sbjct 5254 TACCTGCAAAAATCAACCGCTGCTGATCTGGGGGTATGCCTTCTTTGTCCTGTATTTTCG 5195
Query 101388 GTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTA 101447
||||||| | || | || || || | ||| || ||||| || | |||||| || ||||
Sbjct 5194 CTTTTACATTCTCAATTGTATCCGAGGATTCGACCTCAAGCGTAATCGTTTTACCAGTTA 5135
Query 101448 AAGTTTTTACAAATATCTGCATGGT 101472
|||| || ||||| || ||||||||
Sbjct 5134 AAGTCTTGACAAAAATTTGCATGGT 5110
>seq4330
Length=27005
Score = 102 bits (112), Expect = 6e-17
Identities = 107/141 (76%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 101329 ACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTG 101388
||||||||| || | || || ||||| || ||||| || || ||||| ||||||||
Sbjct 21275 ACCTGCAAAAATAAGTCGTTGCTGATCAGGTGGAATACCCTCCTTATCCTGAATTTTAGT 21216
Query 101389 TTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAA 101448
|| ||| | || | ||| || |||| ||| || ||||| || | ||| || || |||||
Sbjct 21215 CTTCACATTCTCAATAGTATCGGACGATTCTACCTCAAGGGTAATCGTCTTTCCAGTTAA 21156
Query 101449 AGTTTTTACAAATATCTGCAT 101469
||||| ||||||||||||||
Sbjct 21155 CGTTTTCACAAATATCTGCAT 21135
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 396253744672485
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |