Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Wuchereria_20bancrofti_20[genbank_20GCA_5F001555675.1_202016-02-09] 5,105 sequences; 90,325,107 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq5105 215 3e-50 seq4026 163 2e-34 seq4130 93.3 3e-13 seq4574 89.7 3e-12 >seq5105 Length=689533 Score = 215 bits (238), Expect = 3e-50 Identities = 275/373 (74%), Gaps = 13/373 (3%) Strand=Plus/Minus Query 474512 ATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCTGAT 474571 |||| || |||||| || ||||||||||||| ||||||||| | || ||||| ||| Sbjct 53120 ATTTCAGACGCTAAACGACTGATTGGTCGTAAGTTTGATGATGGATCAGTGCAATCGGAT 53061 Query 474572 ATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGT---AAACCATATATAGAAGC- 474627 ||| |||||||| ||||| || | |||| ||||||| ||||| || | | || Sbjct 53060 ATGAAACATTGGCCATTTAAAGTAGTGAATGCTGGTGGTGGTAAACC-TAAAGTGCAGGT 53002 Query 474628 --AATACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTA 474685 |||||| | ||||| || || ||| | || ||| | ||||| || |||||||| Sbjct 53001 TGAATACAAG--GGTGAGACAAAGACCTTTACTCCAGAAGAGATTTCGTCGATGGTTTTG 52944 Query 474686 GCCAAAATGAAACAAACCGCG--AGCTCATATCTTGGACAAGAAGTAACTGATGCAGTAA 474743 | |||||||| | || || |||| | ||| || || | || | ||||| || | Sbjct 52943 GTTAAAATGAAGGAGACGGCTGAAGCT--TTTCTGGGTCATGCGGTCAAGGATGCTGTTA 52886 Query 474744 TTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAA 474803 |||| || || |||||||||||||| || || || ||||| ||||||||| | || || Sbjct 52885 TTACAGTCCCCGCATATTTTAATGACTCACAGCGACAAGCCACTAAAGATTCCGGTGCAA 52826 Query 474804 TTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATG 474863 |||| ||||| ||||| || |||||||| || |||||||||||||| || ||||||||| Sbjct 52825 TTGCTGGTCTAAATGTCTTGCGTATTATCAACGAACCAACAGCAGCTGCTATTGCTTATG 52766 Query 474864 GTCTTGATAAGAA 474876 || | || ||||| Sbjct 52765 GTTTGGACAAGAA 52753 Score = 123 bits (136), Expect = 2e-22 Identities = 113/143 (79%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 474734 GATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGAT 474793 ||||| ||| | ||||| ||||||||||| || ||||| ||||| ||||||||||||||| Sbjct 57867 GATGCCGTAGTAACTGTGCCAGCATATTTCAACGATTCCCAACGGCAAGCAACTAAAGAT 57808 Query 474794 GCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCA 474853 || || ||||| || || || ||| | || || || ||||||||||| || || || Sbjct 57807 GCAGGTGCCATTGCTGGCCTGAACGTTCTTCGAATCATCAATGAACCAACCGCTGCTGCT 57748 Query 474854 CTTGCTTATGGTCTTGATAAGAA 474876 |||| || ||||| |||||||| Sbjct 57747 ATTGCGTACGGTCTAGATAAGAA 57725 Score = 96.9 bits (106), Expect = 2e-14 Identities = 103/135 (76%), Gaps = 1/135 (1%) Strand=Plus/Plus Query 290821 TCCAAGACCATATGTTAATGAAGCTGCTGTTGGTTCATTTATAATTCTTAATACATCAAG 290880 ||||| |||||| | | | ||||||||||||||| || ||||| | || |||| || Sbjct 52759 TCCAA-ACCATAAGCAATAGCAGCTGCTGTTGGTTCGTTGATAATACGCAAGACATTTAG 52817 Query 290881 ACCTGCAATTTTTGCCGAATCTAAAGTTGCCTGGCGTTGCGCATCATTAAAATAAGCAGG 290940 ||| |||||| | |||||| ||| || || || || | ||||||||||| || || Sbjct 52818 ACCAGCAATTGCACCGGAATCTTTAGTGGCTTGTCGCTGTGAGTCATTAAAATATGCGGG 52877 Query 290941 GACTGTAATAACAGC 290955 ||||||||||||||| Sbjct 52878 GACTGTAATAACAGC 52892 Score = 93.3 bits (102), Expect = 3e-13 Identities = 98/129 (76%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 476090 GGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCA 476149 || ||||| ||||| || | || || || ||||| ||||| || ||||||||||||||| Sbjct 56367 GGAATTCCGCCTGCCCCTCGTGGTGTACCACAAATCGAAGTAACGTTTGATATTGATGCA 56308 Query 476150 AATGGTATTCTTAATGTTACTGCTTGTGATAAATCTAGTAACAAGAGTAAAAATATAACT 476209 ||||||||||| ||||| |||| |||||||| | |||| || || ||||| Sbjct 56307 AATGGTATTCTGAATGTCTCTGCACAAGATAAATCCACAGGCAAGCACAATAAGATAACA 56248 Query 476210 ATTACAAAC 476218 ||||| ||| Sbjct 56247 ATTACTAAC 56239 Score = 89.7 bits (98), Expect = 3e-12 Identities = 111/152 (73%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 476033 GAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGAAGGT 476092 ||||||||| | || || ||||| |||||| ||||| | || | | || Sbjct 51435 GAAGGTGAACGTGCTTTGACCAAAGACAATAACTTGCTTGGTAAATTCGAGTTGTCTGGA 51376 Query 476093 ATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAAT 476152 ||||| |||||||| | || || || ||||||||||| || |||||||||||||| || Sbjct 51375 ATTCCGCCTGCTCCTCGCGGTGTGCCGCAAATTGAAGTCACCTTTGATATTGATGCCAAC 51316 Query 476153 GGTATTCTTAATGTTACTGCTTGTGATAAATC 476184 |||||||| |||||| | || |||||||| Sbjct 51315 GGTATTCTGAATGTTTCCGCCCAGGATAAATC 51284 >seq4026 Length=18768 Score = 163 bits (180), Expect = 2e-34 Identities = 179/237 (76%), Gaps = 2/237 (1%) Strand=Plus/Minus Query 474642 AAACTAAACAATTTTC--ACCGGAACAAATTTCTTCAATGGTTTTAGCCAAAATGAAACA 474699 |||| ||| || ||| ||| || | ||||| |||||||| | | ||||||||| | Sbjct 9843 AAACGAAAAAACCTTCGCACCTGAGGAGATTTCAGCAATGGTTCTTGGCAAAATGAAGGA 9784 Query 474700 AACCGCGAGCTCATATCTTGGACAAGAAGTAACTGATGCAGTAATTACTGTTCCAGCATA 474759 || ||| ||||||| ||| | ||||||| ||||||| |||| || || || || Sbjct 9783 AATTGCGGAAGCATATCTAGGAAAGGAAGTAAAACATGCAGTCGTTACGGTACCTGCTTA 9724 Query 474760 TTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCAGGTCTTAATGT 474819 ||||||||| | ||||||||||| || |||||||| || | ||||| ||||| ||||| Sbjct 9723 CTTTAATGATGCACAACGTCAAGCTACCAAAGATGCAGGTACTATTGCCGGTCTCAATGT 9664 Query 474820 TTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCTTGATAAGAA 474876 | | ||||| || |||||||| ||||| ||||| |||| ||||| | |||||||| Sbjct 9663 TGTTCGTATCATCAATGAACCTACAGCTGCCGCTATTGCATATGGATTGGATAAGAA 9607 Score = 102 bits (112), Expect = 5e-16 Identities = 157/223 (70%), Gaps = 6/223 (3%) Strand=Plus/Minus Query 474378 AAAATGGTAAAGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATG 474437 ||||||| ||| ||||| ||||| ||||| ||||||||| ||| || |||||||| | Sbjct 10198 AAAATGGACGAGTGGAAATCATTGCAAATGAACAAGGTAATCGAATCACGCCATCATACG 10139 Query 474438 TTTCTTTTACTGA--AAC----TGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTG 474491 || | || |||| || ||| | ||||||||| ||||| || ||| |||| Sbjct 10138 TTGCATTCACTGGTGAAGGCGGTGAGCGTCTTATTGGTGATGCAGCCAAAAATCAGTTAA 10079 Query 474492 CATCTAATCCTGTTAATACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATG 474551 || | ||||| | |||||| | ||||||| |||| | ||||||| || | | | | Sbjct 10078 CAACGAATCCGGAAAATACTGTCTTTGATGTTAAACGTCTGATTGGCCGAGAGTACAAGG 10019 Query 474552 ATACCACTGTCCAATCTGATATGCGTCATTGGCCTTTTAAGGT 474594 || | ||||| || ||||| ||||||||||| || || Sbjct 10018 ATTCAACTGTACAGCAAGATATTAAACATTGGCCTTTCAATGT 9976 >seq4130 Length=21019 Score = 93.3 bits (102), Expect = 3e-13 Identities = 114/153 (75%), Gaps = 2/153 (1%) Strand=Plus/Plus Query 480618 TCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTG 480677 || || || ||||| || ||||| || || || || ||||| || ||||| ||||||||| Sbjct 11901 TCCTCCAGCTGCTTGCCCGCAAAGATCAGTCGCTGCTGATCTGGTGGAATGCCTTCCTTG 11960 Query 480678 TCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAAT 480736 || || || ||| |||||| ||| |||||||||| | | | ||| || || || Sbjct 11961 TCCTGGATTTTTGCTTTGACGTTTTCGATAGTATCAGAAGCCTCCA-CTTCGAGTGTTAT 12019 Query 480737 AGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 |||||||| || | |||||| || |||||||| Sbjct 12020 GGTTTTACCCGTCAAAGTCTTTACAAAAATTTG 12052 >seq4574 Length=39733 Score = 89.7 bits (98), Expect = 3e-12 Identities = 113/153 (74%), Gaps = 2/153 (1%) Strand=Plus/Plus Query 480618 TCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTG 480677 || || || ||||| || ||||| || || || || ||||| || ||||| ||||||||| Sbjct 20888 TCCTCCAGCTGCTTGCCCGCAAAGATCAGTCGCTGCTGATCTGGTGGAATGCCTTCCTTG 20947 Query 480678 TCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAAT 480736 || || |||||| |||||| ||| |||||||||| | | | ||| || || || Sbjct 20948 TCCTGGATCTTTGCTTTGACGTTTTCGATAGTATCAGAAGCCTCCA-CTTCTAGTGTTAT 21006 Query 480737 AGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || ||||| || | |||||| || ||||| || Sbjct 21007 GGTCTTACCCGTCAAAGTCTTTACAAAAATCTG 21039 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3267960221780540