Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Wuchereria_20bancrofti_20[genbank_20GCA_5F001555675.1_202016-02-09] 5,105 sequences; 90,325,107 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq4574 105 1e-17 seq4130 105 1e-17 seq4330 100 5e-16 >seq4574 Length=39733 Score = 105 bits (116), Expect = 1e-17 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 193218 TTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTG 193277 || || |||||||| | | ||| ||||| ||||| || ||||||||||| || || ||| Sbjct 21535 TTACCAGCAAAAATGAGGCGCTGCTGATCCGGAGGAATCCCTTCTTTATCCTGAATCTTG 21594 Query 193278 GTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTT 193337 | || | |||| || ||||| |||| ||||||||||| || || || || || || Sbjct 21595 GCCTTCACATTTTCGATTGTATCAGAAGCCTCAACTTCTAAGGTGATCGTCTTGCCCGTC 21654 Query 193338 AGCGTTTTTACAAATATTTGCAT 193360 | ||||||||||| |||||||| Sbjct 21655 AATGTTTTTACAAAAATTTGCAT 21677 Score = 96.9 bits (106), Expect = 6e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 193221 CCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTT 193280 || |||||||| | | ||| || || || || || || || || ||||||||||| | | Sbjct 22208 CCTGCAAAAATAAGGCGCTGCTGGTCTGGCGGGATACCCTCCTTGTCTTGTATTTTTGCT 22267 Query 193281 TTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGC 193340 || | |||| ||| || || |||| ||| ||||| ||||| || ||||| || || || Sbjct 22268 TTAACATTTTCAATTGTGTCTGAAGCCTCCACTTCAAGAGTGATTGTTTTTCCAGTCAGT 22327 Query 193341 GTTTTTACAAATATTTGCATTTT 193363 ||||| || || |||||||| || Sbjct 22328 GTTTTCACGAAGATTTGCATGTT 22350 >seq4130 Length=21019 Score = 105 bits (116), Expect = 1e-17 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 193218 TTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTG 193277 || || |||||||| | | ||| ||||| ||||| || ||||||||||| || || ||| Sbjct 12548 TTACCAGCAAAAATAAGGCGCTGCTGATCCGGAGGGATCCCTTCTTTATCCTGAATCTTG 12607 Query 193278 GTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTT 193337 | |||| |||| || || || |||| ||||||||||| || || || || || || Sbjct 12608 GCCTTTACATTTTCGATTGTGTCAGAAGCCTCAACTTCTAAGGTGATCGTCTTGCCCGTC 12667 Query 193338 AGCGTTTTTACAAATATTTGCAT 193360 | ||||||||||| |||||||| Sbjct 12668 AATGTTTTTACAAAAATTTGCAT 12690 Score = 100 bits (110), Expect = 5e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 193221 CCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTT 193280 || |||||||| | | ||| || || || || || || || || ||||||||||| | | Sbjct 13216 CCTGCAAAAATAAGGCGCTGCTGGTCTGGCGGGATACCCTCCTTGTCTTGTATTTTTGCT 13275 Query 193281 TTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGC 193340 || | |||| ||| || || |||| ||| || || ||||| || || || || |||||| Sbjct 13276 TTAACATTTTCAATTGTGTCTGAAGCCTCCACCTCAAGAGTGATCGTCTTTCCAGTTAGC 13335 Query 193341 GTTTTTACAAATATTTGCATTTT 193363 ||||| ||||| |||||||| || Sbjct 13336 GTTTTCACAAAGATTTGCATGTT 13358 >seq4330 Length=27005 Score = 100 bits (110), Expect = 5e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 193221 CCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTT 193280 || |||||||| | || || |||||||| || || || || ||||| || ||||| || Sbjct 21274 CCTGCAAAAATAAGTCGTTGCTGATCAGGTGGAATACCCTCCTTATCCTGAATTTTAGTC 21215 Query 193281 TTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGC 193340 || | ||| |||||||||||| || || || || || || || || || || |||| | Sbjct 21214 TTCACATTCTCAATAGTATCGGACGATTCTACCTCAAGGGTAATCGTCTTTCCAGTTAAC 21155 Query 193341 GTTTTTACAAATATTTGCATTTT 193363 ||||| |||||||| ||||| || Sbjct 21154 GTTTTCACAAATATCTGCATCTT 21132 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899596990803600