Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Wuchereria_20bancrofti_20[genbank_20GCA_5F001555675.1_202016-02-09]
5,105 sequences; 90,325,107 total letters
Query= NC_021247.1
Length=228750
Score E
Sequences producing significant alignments: (Bits) Value
seq4574 111 2e-19
seq4209 95.1 2e-14
seq3175 95.1 2e-14
seq4130 86.0 9e-12
>seq4574
Length=39733
Score = 111 bits (122), Expect = 2e-19
Identities = 147/204 (72%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881
|||||| || ||| | || || ||||| || || || || ||| ||||||| || | |||
Sbjct 21043 AATGCAGATTTTTGTAAAGACTTTGACGGGTAAGACCATAACACTAGAAGTGGAGGCTTC 20984
Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941
||||| ||| |||||| ||| || || || || || |||||||| || ||||| ||
Sbjct 20983 TGATACTATCGAAAACGTCAAAGCAAAGATCCAGGACAAGGAAGGCATTCCACCAGATCA 20924
Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001
|| || |||| | ||| || |||||||| || || | || || || ||||||||
Sbjct 20923 GCAGCGACTGATCTTTGCGGGCAAGCAGCTGGAGGACGGTCGTACATTGTCCGATTATAA 20864
Query 156002 TATATCCAAAGAGGCGACGCTTCA 156025
||| || ||| ||||||| ||
Sbjct 20863 TATTCAGAAGGAGTCGACGCTGCA 20840
Score = 95.1 bits (104), Expect = 2e-14
Identities = 108/145 (74%), Gaps = 0/145 (0%)
Strand=Plus/Minus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
|||||||| ||| | ||||||||||| || || || || || |||||||| || | ||||
Sbjct 21677 ATGCAAATTTTTGTAAAAACATTGACGGGCAAGACGATCACCTTAGAAGTTGAGGCTTCT 21618
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|||| || ||| ||||| || || || ||||||||||| || ||||| || ||
Sbjct 21617 GATACAATCGAAAATGTGAAGGCCAAGATTCAGGATAAAGAAGGGATTCCTCCGGATCAG 21558
Query 155943 CAAAGATTGATTTATGCCGGTAAGC 155967
|| | | |||| ||| |||||||
Sbjct 21557 CAGCGCCTCATTTTTGCTGGTAAGC 21533
>seq4209
Length=23298
Score = 95.1 bits (104), Expect = 2e-14
Identities = 106/142 (75%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
|||||||| ||| | || || || ||||| ||||| ||||| | || |||||| ||
Sbjct 2669 ATGCAAATTTTTGTCAAGACTTTAACTGGTAAAACGATTACGCTTGAGGTCGAATCCTCG 2610
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|||| ||| || || ||| |||||||| || |||||||||||||| ||||| ||
Sbjct 2609 GATACAATTGAGAATGTAAAAGCGAAAATACAGGACAAAGAAGGCATACCCCCAGATCAG 2550
Query 155943 CAAAGATTGATTTATGCCGGTA 155964
|| | ||||||| ||| ||||
Sbjct 2549 CAGCGGTTGATTTTTGCAGGTA 2528
>seq3175
Length=8402
Score = 95.1 bits (104), Expect = 2e-14
Identities = 106/142 (75%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
|||||||| ||| | || || || ||||| ||||| ||||| | || |||||| ||
Sbjct 5113 ATGCAAATTTTTGTCAAGACTTTAACTGGTAAAACGATTACGCTTGAGGTCGAATCCTCG 5172
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|||| ||| || || ||| |||||||| || |||||||||||||| ||||| ||
Sbjct 5173 GATACAATTGAGAATGTAAAAGCGAAAATACAGGACAAAGAAGGCATACCCCCAGATCAG 5232
Query 155943 CAAAGATTGATTTATGCCGGTA 155964
|| | ||||||| ||| ||||
Sbjct 5233 CAGCGGTTGATTTTTGCAGGTA 5254
>seq4130
Length=21019
Score = 86.0 bits (94), Expect = 9e-12
Identities = 106/145 (73%), Gaps = 0/145 (0%)
Strand=Plus/Minus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
|||||||| ||| | ||||||||||| || || || || || |||||||| || | ||||
Sbjct 12690 ATGCAAATTTTTGTAAAAACATTGACGGGCAAGACGATCACCTTAGAAGTTGAGGCTTCT 12631
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|| | || ||| || || || || || ||||||||||| || ||||| || ||
Sbjct 12630 GACACAATCGAAAATGTAAAGGCCAAGATTCAGGATAAAGAAGGGATCCCTCCGGATCAG 12571
Query 155943 CAAAGATTGATTTATGCCGGTAAGC 155967
|| | | |||| ||| |||||||
Sbjct 12570 CAGCGCCTTATTTTTGCTGGTAAGC 12546
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 731825297418000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |