Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Wuchereria_20bancrofti_20[genbank_20GCA_5F001555675.1_202016-02-09] 5,105 sequences; 90,325,107 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq4330 116 7e-21 seq4574 109 1e-18 seq4209 107 4e-18 seq3175 107 4e-18 seq4130 105 1e-17 >seq4330 Length=27005 Score = 116 bits (128), Expect = 7e-21 Identities = 112/144 (78%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 192396 ACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATT 192455 ||| ||||| || | || || ||||||||||| || || || ||||| || |||||| | Sbjct 21275 ACCTGCAAAAATAAGTCGTTGCTGATCAGGTGGAATACCCTCCTTATCCTGAATTTTAGT 21216 Query 192456 TTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAA 192515 || ||||| |||| ||| ||||||||||| || || ||||| || || |||||||| Sbjct 21215 CTTCACATTCTCAATAGTATCGGACGATTCTACCTCAAGGGTAATCGTCTTTCCAGTTAA 21156 Query 192516 TGTTTTAATAAATATCTGCATTTT 192539 ||||| | |||||||||||| || Sbjct 21155 CGTTTTCACAAATATCTGCATCTT 21132 >seq4574 Length=39733 Score = 109 bits (120), Expect = 1e-18 Identities = 134/183 (73%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 192355 ATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTC 192414 ||||||||||| || ||||| || | || |||| || || || |||||||| | || | Sbjct 20861 ATATTATAATCGGACAATGTACGACCGTCCTCCAGCTGCTTGCCCGCAAAGATCAGTCGC 20920 Query 192415 TGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAA 192474 || ||||| ||||| || ||||| || || || || || ||| || || |||| | Sbjct 20921 TGCTGATCTGGTGGAATGCCTTCCTTGTCCTGGATCTTTGCTTTGACGTTTTCGATAGTA 20980 Query 192475 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGC 192534 || || | || |||||||| || ||||| ||||| || || || || | ||| |||||| Sbjct 20981 TCAGAAGCCTCCACTTCTAGTGTTATGGTCTTACCCGTCAAAGTCTTTACAAAAATCTGC 21040 Query 192535 ATT 192537 ||| Sbjct 21041 ATT 21043 >seq4209 Length=23298 Score = 107 bits (118), Expect = 4e-18 Identities = 109/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 192395 TACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 192454 |||| ||||| || || | ||| ||||| || ||||| |||||||| || |||||||| Sbjct 2528 TACCTGCAAAAATCAACCGCTGCTGATCTGGGGGTATGCCTTCTTTGTCCTGTATTTTCG 2587 Query 192455 TTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 192514 ||||||||| || | ||| || ||||| || || || ||||| ||||||||||||| Sbjct 2588 CTTTTACATTCTCAATTGTATCCGAGGATTCGACCTCAAGCGTAATCGTTTTACCAGTTA 2647 Query 192515 ATGTTTTAATAAATATCTGCAT 192536 | || || | ||| || ||||| Sbjct 2648 AAGTCTTGACAAAAATTTGCAT 2669 >seq3175 Length=8402 Score = 107 bits (118), Expect = 4e-18 Identities = 109/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 192395 TACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 192454 |||| ||||| || || | ||| ||||| || ||||| |||||||| || |||||||| Sbjct 5254 TACCTGCAAAAATCAACCGCTGCTGATCTGGGGGTATGCCTTCTTTGTCCTGTATTTTCG 5195 Query 192455 TTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 192514 ||||||||| || | ||| || ||||| || || || ||||| ||||||||||||| Sbjct 5194 CTTTTACATTCTCAATTGTATCCGAGGATTCGACCTCAAGCGTAATCGTTTTACCAGTTA 5135 Query 192515 ATGTTTTAATAAATATCTGCAT 192536 | || || | ||| || ||||| Sbjct 5134 AAGTCTTGACAAAAATTTGCAT 5113 >seq4130 Length=21019 Score = 105 bits (116), Expect = 1e-17 Identities = 133/183 (73%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 192355 ATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTC 192414 ||||| ||||| || ||||| || | || |||| || || || |||||||| | || | Sbjct 11874 ATATTGTAATCGGACAATGTACGACCGTCCTCCAGCTGCTTGCCCGCAAAGATCAGTCGC 11933 Query 192415 TGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAA 192474 || ||||| ||||| || ||||| || || || ||||| ||| || || |||| | Sbjct 11934 TGCTGATCTGGTGGAATGCCTTCCTTGTCCTGGATTTTTGCTTTGACGTTTTCGATAGTA 11993 Query 192475 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGC 192534 || || | || ||||| || || ||||||||||| || || || || | ||| || ||| Sbjct 11994 TCAGAAGCCTCCACTTCGAGTGTTATGGTTTTACCCGTCAAAGTCTTTACAAAAATTTGC 12053 Query 192535 ATT 192537 ||| Sbjct 12054 ATT 12056 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984415607316750