Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Wuchereria_20bancrofti_20[genbank_20GCA_5F001555675.1_202016-02-09] 5,105 sequences; 90,325,107 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq4330 116 7e-21 seq4209 107 3e-18 seq3175 107 3e-18 seq4574 98.7 2e-15 seq4130 96.9 6e-15 >seq4330 Length=27005 Score = 116 bits (128), Expect = 7e-21 Identities = 112/144 (78%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 171929 ACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATT 171988 ||| |||||||| | || || || |||||||| || || || ||||| || |||||| | Sbjct 21275 ACCTGCAAAAATAAGTCGTTGCTGATCAGGTGGAATACCCTCCTTATCCTGAATTTTAGT 21216 Query 171989 TTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAA 172048 || ||||| |||||||| ||||||||||| || || ||||| || || |||||||| Sbjct 21215 CTTCACATTCTCAATAGTATCGGACGATTCTACCTCAAGGGTAATCGTCTTTCCAGTTAA 21156 Query 172049 TGTTTTAATGAATATCTGCATTTT 172072 ||||| | ||||||||||| || Sbjct 21155 CGTTTTCACAAATATCTGCATCTT 21132 >seq4209 Length=23298 Score = 107 bits (118), Expect = 3e-18 Identities = 109/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 171928 TACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 171987 |||| |||||||| || | ||| || || || ||||| |||||||| || |||||||| Sbjct 2528 TACCTGCAAAAATCAACCGCTGCTGATCTGGGGGTATGCCTTCTTTGTCCTGTATTTTCG 2587 Query 171988 TTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 172047 ||||||||| || ||||| || ||||| || || || ||||| ||||||||||||| Sbjct 2588 CTTTTACATTCTCAATTGTATCCGAGGATTCGACCTCAAGCGTAATCGTTTTACCAGTTA 2647 Query 172048 ATGTTTTAATGAATATCTGCAT 172069 | || || | || || ||||| Sbjct 2648 AAGTCTTGACAAAAATTTGCAT 2669 >seq3175 Length=8402 Score = 107 bits (118), Expect = 3e-18 Identities = 109/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 171928 TACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 171987 |||| |||||||| || | ||| || || || ||||| |||||||| || |||||||| Sbjct 5254 TACCTGCAAAAATCAACCGCTGCTGATCTGGGGGTATGCCTTCTTTGTCCTGTATTTTCG 5195 Query 171988 TTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 172047 ||||||||| || ||||| || ||||| || || || ||||| ||||||||||||| Sbjct 5194 CTTTTACATTCTCAATTGTATCCGAGGATTCGACCTCAAGCGTAATCGTTTTACCAGTTA 5135 Query 172048 ATGTTTTAATGAATATCTGCAT 172069 | || || | || || ||||| Sbjct 5134 AAGTCTTGACAAAAATTTGCAT 5113 >seq4574 Length=39733 Score = 98.7 bits (108), Expect = 2e-15 Identities = 132/184 (72%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 171887 AATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCT 171946 |||||||||||| || || | || |||| |||| || || || ||||| || | || Sbjct 20860 AATATTATAATCGGACAATGTACGACCGTCCTCCAGCTGCTTGCCCGCAAAGATCAGTCG 20919 Query 171947 CTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGT 172006 ||| || || ||||| || ||||| || || || || || ||| || || ||||| Sbjct 20920 CTGCTGATCTGGTGGAATGCCTTCCTTGTCCTGGATCTTTGCTTTGACGTTTTCGATAGT 20979 Query 172007 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTG 172066 ||| || | || |||||||| || ||||| ||||| || || || || | || ||||| Sbjct 20980 ATCAGAAGCCTCCACTTCTAGTGTTATGGTCTTACCCGTCAAAGTCTTTACAAAAATCTG 21039 Query 172067 CATT 172070 |||| Sbjct 21040 CATT 21043 Score = 91.5 bits (100), Expect = 3e-13 Identities = 107/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 171928 TACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 171987 |||| |||||||| | | ||| ||||| || || || || || || ||||||||||| Sbjct 22206 TACCTGCAAAAATAAGGCGCTGCTGGTCTGGCGGGATACCCTCCTTGTCTTGTATTTTTG 22265 Query 171988 TTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 172047 ||| ||||| || || ||||| | || ||||| ||||| || ||||| ||||| | Sbjct 22266 CTTTAACATTTTCAATTGTGTCTGAAGCCTCCACTTCAAGAGTGATTGTTTTTCCAGTCA 22325 Query 172048 ATGTTTTAATGAATATCTGCATTTT 172072 |||||| | ||| || ||||| || Sbjct 22326 GTGTTTTCACGAAGATTTGCATGTT 22350 >seq4130 Length=21019 Score = 96.9 bits (106), Expect = 6e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 171843 CCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGAT 171902 ||||| | ||| || | |||| || | || | ||| || |||||| ||||| || Sbjct 11829 CCACCACGAAGGCGAAGAACTAGGTGCAGCGTCGACTCCTTCTGAATATTGTAATCGGAC 11888 Query 171903 AAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGT 171962 || | || |||| |||| || || || ||||| || | || ||| || || ||||| Sbjct 11889 AATGTACGACCGTCCTCCAGCTGCTTGCCCGCAAAGATCAGTCGCTGCTGATCTGGTGGA 11948 Query 171963 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACT 172022 || ||||| || || || ||||| ||| || || |||||||| || | || ||| Sbjct 11949 ATGCCTTCCTTGTCCTGGATTTTTGCTTTGACGTTTTCGATAGTATCAGAAGCCTCCACT 12008 Query 172023 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 || || || ||||||||||| || || || || | || || |||||| Sbjct 12009 TCGAGTGTTATGGTTTTACCCGTCAAAGTCTTTACAAAAATTTGCATT 12056 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905078241009000