Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Wuchereria_20bancrofti_20[genbank_20GCA_5F001555675.1_202016-02-09] 5,105 sequences; 90,325,107 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq4574 127 2e-24 seq4130 118 1e-21 seq4209 96.9 3e-15 seq3175 96.9 3e-15 >seq4574 Length=39733 Score = 127 bits (140), Expect = 2e-24 Identities = 157/212 (74%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| ||| | || || | || ||||| || || || || ||||| || || | Sbjct 21042 ATGCAGATTTTTGTAAAGACTTTGACGGGTAAGACCATAACACTAGAAGTGGAGGCTTCT 20983 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | |||| || ||| ||||||||| ||||| ||||| || || || ||||| Sbjct 20982 GATACTATCGAAAACGTCAAAGCAAAGATCCAGGACAAGGAAGGCATTCCACCAGATCAG 20923 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGA--TTCGAGAAACA-TGTCAGATTAT 24880 || || |||||||||| || || ||||||||||| ||| ||| |||| |||||| Sbjct 20922 CAGCGACTGATCTTTGCGGGCAAGCAGCTGGAGGACGGTCG---TACATTGTCCGATTAT 20866 Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGT 24912 || ||||| ||||| ||||| || ||| |||| Sbjct 20865 AATATTCAGAAGGAGTCGACGCTGCACCTGGT 20834 Score = 89.7 bits (98), Expect = 5e-13 Identities = 106/141 (75%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| |||||| ||||||| || ||||||||||| || || | ||||| ||||| | Sbjct 22023 ATGCAAATCTTTGTTAAAACTCTTACCGGTAAAACAATCACATTGGAAGTGGAAGCATCT 21964 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || || | || || | ||| ||||| ||||| ||||| || ||||| || || || || Sbjct 21963 GATACCATCGAGAATGTTAAGGCAAAA-ATCCAGGACAAGGAGGGAATTCCGCCAGACCA 21905 Query 24823 ACAACGTTTGATCTTTGCCGG 24843 || || |||||||| || || Sbjct 21904 GCAGCGATTGATCTTCGCGGG 21884 >seq4130 Length=21019 Score = 118 bits (130), Expect = 1e-21 Identities = 152/207 (73%), Gaps = 6/207 (3%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || ||| | || || | || |||||||| || || |||||||| || || | Sbjct 12055 ATGCAAATTTTTGTAAAGACTTTGACGGGTAAAACCATAACACTCGAAGTGGAGGCTTCT 11996 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | |||| || ||| ||| ||||| ||||| ||||| || || || ||||| Sbjct 11995 GATACTATCGAAAACGTCAAAGCAAAAATCCAGGACAAGGAAGGCATTCCACCAGATCAG 11936 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGA--TTCGAGAAACA-TGTCAGATTAT 24880 || || |||||||||| || || ||||||||||| ||| ||| |||| ||||| Sbjct 11935 CAGCGACTGATCTTTGCGGGCAAGCAGCTGGAGGACGGTCG---TACATTGTCCGATTAC 11879 Query 24881 AACATTCAAAAGGAATCGACACTACAC 24907 || ||||| ||||| ||||| || ||| Sbjct 11878 AATATTCAGAAGGAGTCGACGCTGCAC 11852 >seq4209 Length=23298 Score = 96.9 bits (106), Expect = 3e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 || ||||| || ||| | || || |||| |||||||| |||||||| || || ||| || Sbjct 2672 ACCATGCAAATTTTTGTCAAGACTTTAACTGGTAAAACGATTACGCTTGAGGTCGAATCC 2613 Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820 | || ||| | || | |||||| || || || ||||||||||| ||||| || ||| Sbjct 2612 TCGGATACAATTGAGAATGTAAAAGCGAAAATACAGGACAAAGAAGGCATACCCCCAGAT 2553 Query 24821 CAACAACGTTTGATCTTTGCCGG 24843 || || || ||||| ||||| || Sbjct 2552 CAGCAGCGGTTGATTTTTGCAGG 2530 >seq3175 Length=8402 Score = 96.9 bits (106), Expect = 3e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 || ||||| || ||| | || || |||| |||||||| |||||||| || || ||| || Sbjct 5110 ACCATGCAAATTTTTGTCAAGACTTTAACTGGTAAAACGATTACGCTTGAGGTCGAATCC 5169 Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820 | || ||| | || | |||||| || || || ||||||||||| ||||| || ||| Sbjct 5170 TCGGATACAATTGAGAATGTAAAAGCGAAAATACAGGACAAAGAAGGCATACCCCCAGAT 5229 Query 24821 CAACAACGTTTGATCTTTGCCGG 24843 || || || ||||| ||||| || Sbjct 5230 CAGCAGCGGTTGATTTTTGCAGG 5252 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449868890909400