Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Wuchereria_20bancrofti_20[genbank_20GCA_5F001555675.1_202016-02-09] 5,105 sequences; 90,325,107 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq4330 109 9e-19 seq4574 84.2 3e-11 seq4209 84.2 3e-11 seq3175 84.2 3e-11 >seq4330 Length=27005 Score = 109 bits (120), Expect = 9e-19 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| ||||| | ||||| ||||| ||||| || ||||| |||| |||||| || Sbjct 21136 TGCAGATATTTGTGAAAACGTTAACTGGAAAGACGATTACCCTTGAGGTAGAATCGTCCG 21195 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||||||| | ||||| || | |||||| || ||| || || |||||||| ||||| | Sbjct 21196 ATACTATTGAGAATGTGAAGACTAAAATTCAGGATAAGGAGGGTATTCCACCTGATCAGC 21255 Query 146152 AAAGACTCATTTTTGCAGGT 146171 || |||| |||||||||||| Sbjct 21256 AACGACTTATTTTTGCAGGT 21275 >seq4574 Length=39733 Score = 84.2 bits (92), Expect = 3e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | |||||| | || ||||||||||| ||| |||| || || | | Sbjct 22346 TGCAAATCTTCGTGAAAACACTGACTGGAAAAACAATCACTCTTGAAGTGGAGGCTTCAG 22287 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || ||| ||||||| ||| ||||||||| || || || || || || || || | Sbjct 22286 ACACAATTGAAAATGTTAAAGCAAAAATACAAGACAAGGAGGGTATCCCGCCAGACCAGC 22227 Query 146152 AAAGACTCATTTTTGCAGGTA 146172 | | || ||||||||||||| Sbjct 22226 AGCGCCTTATTTTTGCAGGTA 22206 >seq4209 Length=23298 Score = 84.2 bits (92), Expect = 3e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || | || || ||||| || ||||| ||||| |||| || ||| | Sbjct 2668 TGCAAATTTTTGTCAAGACTTTAACTGGTAAAACGATTACGCTTGAGGTCGAATCCTCGG 2609 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| | ||||||||| |||||||| ||||||||||| || || ||||| | Sbjct 2608 ATACAATTGAGAATGTAAAAGCGAAAATACAGGACAAAGAAGGCATACCCCCAGATCAGC 2549 Query 146152 AAAGACTCATTTTTGCAGGTA 146172 | | | ||||||||||||| Sbjct 2548 AGCGGTTGATTTTTGCAGGTA 2528 >seq3175 Length=8402 Score = 84.2 bits (92), Expect = 3e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || | || || ||||| || ||||| ||||| |||| || ||| | Sbjct 5114 TGCAAATTTTTGTCAAGACTTTAACTGGTAAAACGATTACGCTTGAGGTCGAATCCTCGG 5173 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| | ||||||||| |||||||| ||||||||||| || || ||||| | Sbjct 5174 ATACAATTGAGAATGTAAAAGCGAAAATACAGGACAAAGAAGGCATACCCCCAGATCAGC 5233 Query 146152 AAAGACTCATTTTTGCAGGTA 146172 | | | ||||||||||||| Sbjct 5234 AGCGGTTGATTTTTGCAGGTA 5254 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 786116232756600