Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Wuchereria_20bancrofti_20[genbank_20GCA_5F001555675.1_202016-02-09] 5,105 sequences; 90,325,107 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq4330 104 2e-17 seq4574 100 2e-16 >seq4330 Length=27005 Score = 104 bits (114), Expect = 2e-17 Identities = 111/144 (77%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 29647 CCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGT 29706 || ||| | || | || ||||||||| || ||||||||||| || || || |||||| || Sbjct 21274 CCTGCAAAAATAAGTCGTTGCTGATCAGGTGGAATACCCTCCTTATCCTG-AATTTTAGT 21216 Query 29707 -TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAA 29765 || ||| | || | ||| || || |||||| ||||| || || || || |||||||| Sbjct 21215 CTTCACATTCTCAATAGTATCGGACGATTCTACCTCAAGGGTAATCGTCTTTCCAGTTAA 21156 Query 29766 GGTTTTAACAAATATCTGCATTTT 29789 ||||| |||||||||||||| || Sbjct 21155 CGTTTTCACAAATATCTGCATCTT 21132 >seq4574 Length=39733 Score = 100 bits (110), Expect = 2e-16 Identities = 101/130 (78%), Gaps = 1/130 (1%) Strand=Plus/Plus Query 29665 TGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTG 29724 ||||| || ||||| |||||||| |||||||||| |||| ||| ||| |||| | ||| Sbjct 22226 TGCTGGTCTGGCGGGATACCCTCCTTGTCTTGTATTTTTGCTTTAACATTTTCAATTGTG 22285 Query 29725 TCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGC 29784 || ||| || ||||||||||| || ||||| ||||| | ||||| || || || ||| Sbjct 22286 TCTGAAGCCTCCACTTCAAGAGTGATTGTTTTTCCAGTCAGTGTTTTCACGAAGATTTGC 22345 Query 29785 AT-TTTAAAA 29793 || |||| || Sbjct 22346 ATGTTTACAA 22355 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385195232744805