Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Wuchereria_20bancrofti_20[genbank_20GCA_5F001555675.1_202016-02-09]
5,105 sequences; 90,325,107 total letters
Query= NC_023639.1
Length=1168989
Score E
Sequences producing significant alignments: (Bits) Value
seq5105 185 7e-41
seq4026 141 7e-28
seq5104 98.7 7e-15
seq3531 91.5 1e-12
>seq5105
Length=689533
Score = 185 bits (204), Expect = 7e-41
Identities = 262/368 (71%), Gaps = 3/368 (1%)
Strand=Plus/Plus
Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391
|| || || | |||||| |||| |||||| || |||||||| || ||||| | ||| |||
Sbjct 52753 TTCTTGTCCAAACCATAAGCAATAGCAGCTGCTGTTGGTTCGTTGATAATACGCAAGACA 52812
Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451
|| |||||||||||| || | ||||||||||||||||| ||||| || |||||||||
Sbjct 52813 TTTAGACCAGCAATTGCACCGGAATCTTTAGTGGCTTGTCGCTGTGAGTCATTAAAATAT 52872
Query 282452 GCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCTTGCTGTTTGT 282511
|| || || |||||||| ||||| | || | | || | | |||| || || |
Sbjct 52873 GCGGGGACTGTAATAACAGCATCCTTGACCGCATGACCCAGAAAAGCTTCAGCCGTCTCC 52932
Query 282512 TTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGAGAATATTGCTTGGATTCATTT 282571
||||||||| |||| ||| || ||||| | |||||||| | | ||| | |||
Sbjct 52933 TTCATTTTAACCAAAACCATCGACGAAATCTCTTCTGGAGTAAAGGTCTTTGTCTCACCC 52992
Query 282572 TGATATGATACTTCAAAATATGGTTT---ATTACCAACATTAATAACTTTAAATGGCCAA 282628
| ||| || | | | ||||| | |||| |||| | |||||||||||||||
Sbjct 52993 TTGTATTCAACCTGCACTTTAGGTTTACCACCACCAGCATTCACTACTTTAAATGGCCAA 53052
Query 282629 TATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGTTTTGCA 282688
| ||||||||| ||||| || | |||| ||| | | |||||| | |||||| ||
Sbjct 53053 TGTTTCATATCCGATTGCACTGATCCATCATCAAACTTACGACCAATCAGTCGTTTAGCG 53112
Query 282689 TCAAAAAT 282696
|| ||||
Sbjct 53113 TCTGAAAT 53120
Score = 136 bits (150), Expect = 3e-26
Identities = 116/143 (81%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391
|| ||||| ||||| ||||||| ||||||||| ||||||||||| || |||| | |||
Sbjct 57725 TTCTTATCTAGACCGTACGCAATAGCAGCAGCGGTTGGTTCATTGATGATTCGAAGAACG 57784
Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451
|| || |||||||| |||||||||||||| ||||| | ||| |||||||| ||||||
Sbjct 57785 TTCAGGCCAGCAATGGCACCTGCATCTTTAGTTGCTTGCCGTTGGGAATCGTTGAAATAT 57844
Query 282452 GCAGGAACAGTAATAACGGCATC 282474
|| || ||||| | ||||||||
Sbjct 57845 GCTGGCACAGTTACTACGGCATC 57867
Score = 109 bits (120), Expect = 4e-18
Identities = 162/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 281341 CATTCTCTCAATTTGATCTTCAGAGAATCTTCCGCGATTATTAGTAATAGTAATATTCTT 281400
||| | ||| || | ||| | || || | ||| || ||| ||||| ||||| || ||
Sbjct 51211 CATCCGCTCGATCTCATCCTTTGACAAACGTCCTTTATCATTGGTAATGGTAATTTTGTT 51270
Query 281401 GGATTTGTTTGTTGATTTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATC 281460
|||| ||| |||||||| ||| | ||||| |||||||| |||||||| | |||
Sbjct 51271 TTGTTTGCCTGTGGATTTATCCTGGGCGGAAACATTCAGAATACCGTTGGCATCAATATC 51330
Query 281461 AAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAA 281520
||| |||||||||||||| || || || | ||||||| || || || ||| | ||
Sbjct 51331 AAAGGTGACTTCAATTTGCGGCACACCGCGAGGAGCAGGCGGAATTCCAGACAACTCGAA 51390
Query 281521 TGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTCACCCTCGAAAA 281570
| | || || ||||| ||||| || || |||||||| ||| |||
Sbjct 51391 TTTACCAAGCAAGTTATTGTCTTTGGTCAAAGCACGTTCACCTTCGTAAA 51440
Score = 96.9 bits (106), Expect = 3e-14
Identities = 100/131 (76%), Gaps = 0/131 (0%)
Strand=Plus/Plus
Query 86116 AAACCGTATGCAAGAGCTGCTGCAGTTGGTTCATTAATTATTTTAAGAACATCTAAACCC 86175
||||| || |||| ||| ||||| |||||||| || || || | |||| || |||
Sbjct 52762 AAACCATAAGCAATAGCAGCTGCTGTTGGTTCGTTGATAATACGCAAGACATTTAGACCA 52821
Query 86176 GCAATTTTAGCAGAATCAAGAGTTGCTTGTCTCTGTGCGTCATTAAAATATGCTGGTACA 86235
|||||| | | ||||| ||| ||||||| ||||| ||||||||||||||| || ||
Sbjct 52822 GCAATTGCACCGGAATCTTTAGTGGCTTGTCGCTGTGAGTCATTAAAATATGCGGGGACT 52881
Query 86236 GTAATAACTGC 86246
|||||||| ||
Sbjct 52882 GTAATAACAGC 52892
Score = 91.5 bits (100), Expect = 1e-12
Identities = 74/90 (82%), Gaps = 0/90 (0%)
Strand=Plus/Plus
Query 282707 GGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAAT 282766
||||| | |||| | |||| |||||||||||| ||||| ||| |||| || || ||||||
Sbjct 53305 GGATTCATTGCAACCTGATTTTTGGCTGCATCGCCAATAAGACGTTCAGTATCGGTAAAT 53364
Query 282767 GAAACATATGATGGAGTTGTGCGATTACCT 282796
| ||||| ||||| ||||| |||||||||
Sbjct 53365 GCCACATACGATGGTGTTGTACGATTACCT 53394
Score = 86.0 bits (94), Expect = 5e-11
Identities = 134/191 (70%), Gaps = 3/191 (2%)
Strand=Plus/Plus
Query 282503 GCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGAGAATATTGCTTG 282562
|| || | ||||||||| | |||| ||| || ||||||| |||||| | | || ||
Sbjct 58277 GCCGTCTCTTTCATTTTCCCCAAAACCATGGAAGAAATTTCTTCTGGTGTAAATGTTTTT 58336
Query 282563 GATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTA---ATAACTTTA 282619
| ||| || ||| ||||| || | ||| || |||| || | || ||||||
Sbjct 58337 GTTTCGCCTTTGTATTCTACTTGAACTTTTGGCTTGCCACCATCAGCACTGATGACTTTA 58396
Query 282620 AATGGCCAATATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAAT 282679
|| ||||| | |||||||||||||| || | | |||| ||| | ||||| || ||
Sbjct 58397 AAGGGCCAGTGCTTCATATCTGATTGTACCGCTGGATCATCAAATTTCCTACCGATCAAC 58456
Query 282680 CGTTTTGCATC 282690
|||||||||||
Sbjct 58457 CGTTTTGCATC 58467
>seq4026
Length=18768
Score = 141 bits (156), Expect = 7e-28
Identities = 162/218 (74%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 282323 TTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATT 282382
||| ||| || ||||| | ||||| |||| ||| ||||| || |||||||| || ||
Sbjct 9598 TTGCCTTCCTTCTTATCCAATCCATATGCAATAGCGGCAGCTGTAGGTTCATTGATGATA 9657
Query 282383 CTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCG 282442
| | |||||| ||||| ||||| | ||||||||||| || ||||| | ||||| |||
Sbjct 9658 CGAACAACATTGAGACCGGCAATAGTACCTGCATCTTTGGTAGCTTGACGTTGTGCATCA 9717
Query 282443 TTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCTT 282502
||||| || ||||| || |||| || |||| | ||||||| ||||| | ||| ||
Sbjct 9718 TTAAAGTAAGCAGGTACCGTAACGACTGCATGTTTTACTTCCTTTCCTAGATATGCTTCC 9777
Query 282503 GCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAAT 282540
|| ||| |||||||| | | || ||||| ||||||
Sbjct 9778 GCAATTTCCTTCATTTTGCCAAGAACCATTGCTGAAAT 9815
Score = 104 bits (114), Expect = 2e-16
Identities = 169/242 (70%), Gaps = 6/242 (2%)
Strand=Plus/Plus
Query 282614 ACTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCA 282673
|| || || ||||||| ||| |||||| || ||| || || || | |||| |||
Sbjct 9976 ACATTGAAAGGCCAATGTTTAATATCTTGCTGTACAGTTGAATCCTTGTACTCTCGGCCA 10035
Query 282674 ATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCT 282733
|| | ||||| ||||||| | |||||| ||||| || |||| |||||||
Sbjct 10036 ATCAGACGTTTAACATCAAAGACAGTATTTTCCGGATTCGTTGTTAACTGATTTTTGGCT 10095
Query 282734 GCATCTCCAATCAGATGTTCT--GTCT----CTGTAAATGAAACATATGATGGAGTTGTG 282787
||||| ||||| ||| | || | || | || |||| ||| |||||||| || |
Sbjct 10096 GCATCACCAATAAGACGCTCACCGCCTTCACCAGTGAATGCAACGTATGATGGCGTGATT 10155
Query 282788 CGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAA 282847
||||||||||| ||||| ||||| ||||| ||| ||||||| | || || |||||
Sbjct 10156 CGATTACCTTGTTCATTTGCAATGATTTCCACTCGTCCATTTTTATAGACTCCAACACAG 10215
Query 282848 CT 282849
||
Sbjct 10216 CT 10217
>seq5104
Length=557454
Score = 98.7 bits (108), Expect = 7e-15
Identities = 135/188 (72%), Gaps = 3/188 (2%)
Strand=Plus/Minus
Query 282329 TGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAA 282388
|| ||||||||||||| || |||| || |||||| || ||||||||| |||| |
Sbjct 18380 TGCTTTTTATCAAGACTGTAAGCAAGCGCCGCAGCAATTAGTTCATTAACTATTCAAAGT 18321
Query 282389 ACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAA 282448
||||| | || ||||| ||||||||||||| || || | ||| |||| || ||
Sbjct 18320 ACATTCAATCCGACAATTTTTCCTGCATCTTTTGTTGCCTAATGTTGAGAATTATTGAAG 18261
Query 282449 TATGCAG---GAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCTTGCT 282505
||||| | | || || || || |||||| ||||| |||| || |||||| ||||
Sbjct 18260 TATGCTGCTAGCACTGTTATCACAGCATCTTTTACTCCTTTCTAAAGATAAGCCTCTGCT 18201
Query 282506 GTTTGTTT 282513
| || |||
Sbjct 18200 GCTTCTTT 18193
>seq3531
Length=11289
Score = 91.5 bits (100), Expect = 1e-12
Identities = 85/108 (79%), Gaps = 0/108 (0%)
Strand=Plus/Plus
Query 917175 TTCGTTATAATGATGAGGAAATTTCAAATCGATTCCACCAAAATGAATATCAATACTATT 917234
|||||||| |||||| |||||||||||||| | |||||| ||||||||| | | | |
Sbjct 4373 TTCGTTATCATGATGTGGAAATTTCAAATCAAAACCACCAGCATGAATATCTAAAGAAGT 4432
Query 917235 TCCTAATGTTTTCTTGATCATGGCTGAGCATTCAATATGCCAACCAGG 917282
|| | ||||| |||| ||||||||||| ||||||||||||||
Sbjct 4433 GCCACAGATTTTCGAACTCATTGCTGAGCATTCGATATGCCAACCAGG 4480
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3740379766073730
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |