Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Wuchereria_20bancrofti_20[genbank_20GCA_5F001555675.1_202016-02-09] 5,105 sequences; 90,325,107 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq5105 185 7e-41 seq4026 141 7e-28 seq5104 98.7 7e-15 seq3531 91.5 1e-12 >seq5105 Length=689533 Score = 185 bits (204), Expect = 7e-41 Identities = 262/368 (71%), Gaps = 3/368 (1%) Strand=Plus/Plus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 || || || | |||||| |||| |||||| || |||||||| || ||||| | ||| ||| Sbjct 52753 TTCTTGTCCAAACCATAAGCAATAGCAGCTGCTGTTGGTTCGTTGATAATACGCAAGACA 52812 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 || |||||||||||| || | ||||||||||||||||| ||||| || ||||||||| Sbjct 52813 TTTAGACCAGCAATTGCACCGGAATCTTTAGTGGCTTGTCGCTGTGAGTCATTAAAATAT 52872 Query 282452 GCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCTTGCTGTTTGT 282511 || || || |||||||| ||||| | || | | || | | |||| || || | Sbjct 52873 GCGGGGACTGTAATAACAGCATCCTTGACCGCATGACCCAGAAAAGCTTCAGCCGTCTCC 52932 Query 282512 TTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGAGAATATTGCTTGGATTCATTT 282571 ||||||||| |||| ||| || ||||| | |||||||| | | ||| | ||| Sbjct 52933 TTCATTTTAACCAAAACCATCGACGAAATCTCTTCTGGAGTAAAGGTCTTTGTCTCACCC 52992 Query 282572 TGATATGATACTTCAAAATATGGTTT---ATTACCAACATTAATAACTTTAAATGGCCAA 282628 | ||| || | | | ||||| | |||| |||| | ||||||||||||||| Sbjct 52993 TTGTATTCAACCTGCACTTTAGGTTTACCACCACCAGCATTCACTACTTTAAATGGCCAA 53052 Query 282629 TATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGTTTTGCA 282688 | ||||||||| ||||| || | |||| ||| | | |||||| | |||||| || Sbjct 53053 TGTTTCATATCCGATTGCACTGATCCATCATCAAACTTACGACCAATCAGTCGTTTAGCG 53112 Query 282689 TCAAAAAT 282696 || |||| Sbjct 53113 TCTGAAAT 53120 Score = 136 bits (150), Expect = 3e-26 Identities = 116/143 (81%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 || ||||| ||||| ||||||| ||||||||| ||||||||||| || |||| | ||| Sbjct 57725 TTCTTATCTAGACCGTACGCAATAGCAGCAGCGGTTGGTTCATTGATGATTCGAAGAACG 57784 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 || || |||||||| |||||||||||||| ||||| | ||| |||||||| |||||| Sbjct 57785 TTCAGGCCAGCAATGGCACCTGCATCTTTAGTTGCTTGCCGTTGGGAATCGTTGAAATAT 57844 Query 282452 GCAGGAACAGTAATAACGGCATC 282474 || || ||||| | |||||||| Sbjct 57845 GCTGGCACAGTTACTACGGCATC 57867 Score = 109 bits (120), Expect = 4e-18 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 281341 CATTCTCTCAATTTGATCTTCAGAGAATCTTCCGCGATTATTAGTAATAGTAATATTCTT 281400 ||| | ||| || | ||| | || || | ||| || ||| ||||| ||||| || || Sbjct 51211 CATCCGCTCGATCTCATCCTTTGACAAACGTCCTTTATCATTGGTAATGGTAATTTTGTT 51270 Query 281401 GGATTTGTTTGTTGATTTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATC 281460 |||| ||| |||||||| ||| | ||||| |||||||| |||||||| | ||| Sbjct 51271 TTGTTTGCCTGTGGATTTATCCTGGGCGGAAACATTCAGAATACCGTTGGCATCAATATC 51330 Query 281461 AAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAA 281520 ||| |||||||||||||| || || || | ||||||| || || || ||| | || Sbjct 51331 AAAGGTGACTTCAATTTGCGGCACACCGCGAGGAGCAGGCGGAATTCCAGACAACTCGAA 51390 Query 281521 TGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTCACCCTCGAAAA 281570 | | || || ||||| ||||| || || |||||||| ||| ||| Sbjct 51391 TTTACCAAGCAAGTTATTGTCTTTGGTCAAAGCACGTTCACCTTCGTAAA 51440 Score = 96.9 bits (106), Expect = 3e-14 Identities = 100/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 86116 AAACCGTATGCAAGAGCTGCTGCAGTTGGTTCATTAATTATTTTAAGAACATCTAAACCC 86175 ||||| || |||| ||| ||||| |||||||| || || || | |||| || ||| Sbjct 52762 AAACCATAAGCAATAGCAGCTGCTGTTGGTTCGTTGATAATACGCAAGACATTTAGACCA 52821 Query 86176 GCAATTTTAGCAGAATCAAGAGTTGCTTGTCTCTGTGCGTCATTAAAATATGCTGGTACA 86235 |||||| | | ||||| ||| ||||||| ||||| ||||||||||||||| || || Sbjct 52822 GCAATTGCACCGGAATCTTTAGTGGCTTGTCGCTGTGAGTCATTAAAATATGCGGGGACT 52881 Query 86236 GTAATAACTGC 86246 |||||||| || Sbjct 52882 GTAATAACAGC 52892 Score = 91.5 bits (100), Expect = 1e-12 Identities = 74/90 (82%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 282707 GGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAAT 282766 ||||| | |||| | |||| |||||||||||| ||||| ||| |||| || || |||||| Sbjct 53305 GGATTCATTGCAACCTGATTTTTGGCTGCATCGCCAATAAGACGTTCAGTATCGGTAAAT 53364 Query 282767 GAAACATATGATGGAGTTGTGCGATTACCT 282796 | ||||| ||||| ||||| ||||||||| Sbjct 53365 GCCACATACGATGGTGTTGTACGATTACCT 53394 Score = 86.0 bits (94), Expect = 5e-11 Identities = 134/191 (70%), Gaps = 3/191 (2%) Strand=Plus/Plus Query 282503 GCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGAGAATATTGCTTG 282562 || || | ||||||||| | |||| ||| || ||||||| |||||| | | || || Sbjct 58277 GCCGTCTCTTTCATTTTCCCCAAAACCATGGAAGAAATTTCTTCTGGTGTAAATGTTTTT 58336 Query 282563 GATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTA---ATAACTTTA 282619 | ||| || ||| ||||| || | ||| || |||| || | || |||||| Sbjct 58337 GTTTCGCCTTTGTATTCTACTTGAACTTTTGGCTTGCCACCATCAGCACTGATGACTTTA 58396 Query 282620 AATGGCCAATATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAAT 282679 || ||||| | |||||||||||||| || | | |||| ||| | ||||| || || Sbjct 58397 AAGGGCCAGTGCTTCATATCTGATTGTACCGCTGGATCATCAAATTTCCTACCGATCAAC 58456 Query 282680 CGTTTTGCATC 282690 ||||||||||| Sbjct 58457 CGTTTTGCATC 58467 >seq4026 Length=18768 Score = 141 bits (156), Expect = 7e-28 Identities = 162/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 282323 TTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATT 282382 ||| ||| || ||||| | ||||| |||| ||| ||||| || |||||||| || || Sbjct 9598 TTGCCTTCCTTCTTATCCAATCCATATGCAATAGCGGCAGCTGTAGGTTCATTGATGATA 9657 Query 282383 CTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCG 282442 | | |||||| ||||| ||||| | ||||||||||| || ||||| | ||||| ||| Sbjct 9658 CGAACAACATTGAGACCGGCAATAGTACCTGCATCTTTGGTAGCTTGACGTTGTGCATCA 9717 Query 282443 TTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCTT 282502 ||||| || ||||| || |||| || |||| | ||||||| ||||| | ||| || Sbjct 9718 TTAAAGTAAGCAGGTACCGTAACGACTGCATGTTTTACTTCCTTTCCTAGATATGCTTCC 9777 Query 282503 GCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAAT 282540 || ||| |||||||| | | || ||||| |||||| Sbjct 9778 GCAATTTCCTTCATTTTGCCAAGAACCATTGCTGAAAT 9815 Score = 104 bits (114), Expect = 2e-16 Identities = 169/242 (70%), Gaps = 6/242 (2%) Strand=Plus/Plus Query 282614 ACTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCA 282673 || || || ||||||| ||| |||||| || ||| || || || | |||| ||| Sbjct 9976 ACATTGAAAGGCCAATGTTTAATATCTTGCTGTACAGTTGAATCCTTGTACTCTCGGCCA 10035 Query 282674 ATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCT 282733 || | ||||| ||||||| | |||||| ||||| || |||| ||||||| Sbjct 10036 ATCAGACGTTTAACATCAAAGACAGTATTTTCCGGATTCGTTGTTAACTGATTTTTGGCT 10095 Query 282734 GCATCTCCAATCAGATGTTCT--GTCT----CTGTAAATGAAACATATGATGGAGTTGTG 282787 ||||| ||||| ||| | || | || | || |||| ||| |||||||| || | Sbjct 10096 GCATCACCAATAAGACGCTCACCGCCTTCACCAGTGAATGCAACGTATGATGGCGTGATT 10155 Query 282788 CGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAA 282847 ||||||||||| ||||| ||||| ||||| ||| ||||||| | || || ||||| Sbjct 10156 CGATTACCTTGTTCATTTGCAATGATTTCCACTCGTCCATTTTTATAGACTCCAACACAG 10215 Query 282848 CT 282849 || Sbjct 10216 CT 10217 >seq5104 Length=557454 Score = 98.7 bits (108), Expect = 7e-15 Identities = 135/188 (72%), Gaps = 3/188 (2%) Strand=Plus/Minus Query 282329 TGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAA 282388 || ||||||||||||| || |||| || |||||| || ||||||||| |||| | Sbjct 18380 TGCTTTTTATCAAGACTGTAAGCAAGCGCCGCAGCAATTAGTTCATTAACTATTCAAAGT 18321 Query 282389 ACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAA 282448 ||||| | || ||||| ||||||||||||| || || | ||| |||| || || Sbjct 18320 ACATTCAATCCGACAATTTTTCCTGCATCTTTTGTTGCCTAATGTTGAGAATTATTGAAG 18261 Query 282449 TATGCAG---GAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCTTGCT 282505 ||||| | | || || || || |||||| ||||| |||| || |||||| |||| Sbjct 18260 TATGCTGCTAGCACTGTTATCACAGCATCTTTTACTCCTTTCTAAAGATAAGCCTCTGCT 18201 Query 282506 GTTTGTTT 282513 | || ||| Sbjct 18200 GCTTCTTT 18193 >seq3531 Length=11289 Score = 91.5 bits (100), Expect = 1e-12 Identities = 85/108 (79%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 917175 TTCGTTATAATGATGAGGAAATTTCAAATCGATTCCACCAAAATGAATATCAATACTATT 917234 |||||||| |||||| |||||||||||||| | |||||| ||||||||| | | | | Sbjct 4373 TTCGTTATCATGATGTGGAAATTTCAAATCAAAACCACCAGCATGAATATCTAAAGAAGT 4432 Query 917235 TCCTAATGTTTTCTTGATCATGGCTGAGCATTCAATATGCCAACCAGG 917282 || | ||||| |||| ||||||||||| |||||||||||||| Sbjct 4433 GCCACAGATTTTCGAACTCATTGCTGAGCATTCGATATGCCAACCAGG 4480 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740379766073730