Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Wuchereria_20bancrofti_20[genbank_20GCA_5F001555675.1_202016-02-09] 5,105 sequences; 90,325,107 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq4574 174 3e-38 seq4130 159 7e-34 seq4330 104 5e-17 seq4209 86.0 1e-11 seq3175 86.0 1e-11 >seq4574 Length=39733 Score = 174 bits (192), Expect = 3e-38 Identities = 168/216 (78%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || ||||| | |||||| || || || ||||| ||||||||||| || | | | |||| Sbjct 20828 CGAAGAACCAGGTGCAGCGTCGACTCCTTCTGAATATTATAATCGGACAATGTACGACCG 20887 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || || || || || || |||||||| |||| || |||||||| || || |||||||| Sbjct 20888 TCCTCCAGCTGCTTGCCCGCAAAGATCAGTCGCTGCTGATCTGGTGGAATGCCTTCCTTG 20947 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 || || ||||||||||| || ||||| || |||||| || || ||||| | ||||| Sbjct 20948 TCCTGGATCTTTGCTTTGACGTTTTCGATAGTATCAGAAGCCTCCACTTCTAGTGTTATG 21007 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 ||||| || ||||| ||||||||||| ||||||||| Sbjct 21008 GTCTTACCCGTCAAAGTCTTTACAAAAATCTGCATT 21043 Score = 123 bits (136), Expect = 5e-23 Identities = 113/143 (79%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || |||||||| || || | || ||||| ||||| || ||||| ||||| |||||||| Sbjct 21535 TTACCAGCAAAAATGAGGCGCTGCTGATCCGGAGGAATCCCTTCTTTATCCTGAATCTTG 21594 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 || || |||||||| || |||||| || || ||||| || || ||||||||||| ||| Sbjct 21595 GCCTTCACATTTTCGATTGTATCAGAAGCCTCAACTTCTAAGGTGATCGTCTTGCCCGTC 21654 Query 82788 AACGTCTTTACAAATATCTGCAT 82810 || || |||||||| || ||||| Sbjct 21655 AATGTTTTTACAAAAATTTGCAT 21677 >seq4130 Length=21019 Score = 159 bits (176), Expect = 7e-34 Identities = 165/216 (76%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || ||||||| |||||| || || || ||||| ||||| ||||| || | | | |||| Sbjct 11841 CGAAGAACTAGGTGCAGCGTCGACTCCTTCTGAATATTGTAATCGGACAATGTACGACCG 11900 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || || || || || || |||||||| |||| || |||||||| || || |||||||| Sbjct 11901 TCCTCCAGCTGCTTGCCCGCAAAGATCAGTCGCTGCTGATCTGGTGGAATGCCTTCCTTG 11960 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 || || || |||||||| || ||||| || |||||| || || ||||| | ||||| Sbjct 11961 TCCTGGATTTTTGCTTTGACGTTTTCGATAGTATCAGAAGCCTCCACTTCGAGTGTTATG 12020 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 || || || ||||| ||||||||||| || |||||| Sbjct 12021 GTTTTACCCGTCAAAGTCTTTACAAAAATTTGCATT 12056 Score = 123 bits (136), Expect = 5e-23 Identities = 113/143 (79%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || |||||||| || || | || ||||| ||||| || ||||| ||||| |||||||| Sbjct 12548 TTACCAGCAAAAATAAGGCGCTGCTGATCCGGAGGGATCCCTTCTTTATCCTGAATCTTG 12607 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 || ||||||||||| || || ||| || || ||||| || || ||||||||||| ||| Sbjct 12608 GCCTTTACATTTTCGATTGTGTCAGAAGCCTCAACTTCTAAGGTGATCGTCTTGCCCGTC 12667 Query 82788 AACGTCTTTACAAATATCTGCAT 82810 || || |||||||| || ||||| Sbjct 12668 AATGTTTTTACAAAAATTTGCAT 12690 Score = 91.5 bits (100), Expect = 3e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 || ||||| || || | || || ||||| || || || ||||| ||||| || |||||| Sbjct 13216 CCTGCAAAAATAAGGCGCTGCTGGTCTGGCGGGATACCCTCCTTGTCTTGTATTTTTGCT 13275 Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790 || ||||||||||| || || || || || || | ||| |||||||| || || | | Sbjct 13276 TTAACATTTTCAATTGTGTCTGAAGCCTCCACCTCAAGAGTGATCGTCTTTCCAGTTAGC 13335 Query 82791 GTCTTTACAAATATCTGCAT 82810 || || ||||| || ||||| Sbjct 13336 GTTTTCACAAAGATTTGCAT 13355 >seq4330 Length=27005 Score = 104 bits (114), Expect = 5e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 || ||||| || |||| ||| ||||| || || || || |||||||| ||||| || | Sbjct 21274 CCTGCAAAAATAAGTCGTTGCTGATCAGGTGGAATACCCTCCTTATCCTGAATTTTAGTC 21215 Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790 || ||||| ||||| ||||| | |||||| || | || |||||||| || || ||| Sbjct 21214 TTCACATTCTCAATAGTATCGGACGATTCTACCTCAAGGGTAATCGTCTTTCCAGTTAAC 21155 Query 82791 GTCTTTACAAATATCTGCAT 82810 || || |||||||||||||| Sbjct 21154 GTTTTCACAAATATCTGCAT 21135 >seq4209 Length=23298 Score = 86.0 bits (94), Expect = 1e-11 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 || ||||| || | | || |||||||| ||||| ||||| || || || || || ||| Sbjct 2530 CCTGCAAAAATCAACCGCTGCTGATCTGGGGGTATGCCTTCTTTGTCCTGTATTTTCGCT 2589 Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790 |||||||| ||||| ||||| | ||| || || | || ||||| || || || || Sbjct 2590 TTTACATTCTCAATTGTATCCGAGGATTCGACCTCAAGCGTAATCGTTTTACCAGTTAAA 2649 Query 82791 GTCTTTACAAATATCTGCAT 82810 ||||| ||||| || ||||| Sbjct 2650 GTCTTGACAAAAATTTGCAT 2669 >seq3175 Length=8402 Score = 86.0 bits (94), Expect = 1e-11 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 || ||||| || | | || |||||||| ||||| ||||| || || || || || ||| Sbjct 5252 CCTGCAAAAATCAACCGCTGCTGATCTGGGGGTATGCCTTCTTTGTCCTGTATTTTCGCT 5193 Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790 |||||||| ||||| ||||| | ||| || || | || ||||| || || || || Sbjct 5192 TTTACATTCTCAATTGTATCCGAGGATTCGACCTCAAGCGTAATCGTTTTACCAGTTAAA 5133 Query 82791 GTCTTTACAAATATCTGCAT 82810 ||||| ||||| || ||||| Sbjct 5132 GTCTTGACAAAAATTTGCAT 5113 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981762980830595