Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Wuchereria_20bancrofti_20[genbank_20GCA_5F001555675.1_202016-02-09] 5,105 sequences; 90,325,107 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq4209 91.5 1e-13 seq3175 91.5 1e-13 seq4130 84.2 1e-11 >seq4209 Length=23298 Score = 91.5 bits (100), Expect = 1e-13 Identities = 108/144 (75%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 33610 CCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGT 33669 || ||||||||||| |||||||||||| | || | ||||||||||| |||||| | Sbjct 2530 CCTGCAAAAATCAACCGCTGCTGATCTGGGGGTATGCCTTCTTTGTCCTGTATTTTCGCT 2589 Query 33670 TTCAACATAGTCACG-GTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAA 33728 || | ||| ||| || || ||||| || |||| ||| ||||||||||| ||||| Sbjct 2590 TTTA-CATTCTCAATTGTATCCGAGGATTCGACCTCAAGCGTAATCGTTTTACCAGTTAA 2648 Query 33729 CGTTTTTACAAAGATCTGCATAGT 33752 || || ||||| || ||||| || Sbjct 2649 AGTCTTGACAAAAATTTGCATGGT 2672 >seq3175 Length=8402 Score = 91.5 bits (100), Expect = 1e-13 Identities = 108/144 (75%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 33610 CCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGT 33669 || ||||||||||| |||||||||||| | || | ||||||||||| |||||| | Sbjct 5252 CCTGCAAAAATCAACCGCTGCTGATCTGGGGGTATGCCTTCTTTGTCCTGTATTTTCGCT 5193 Query 33670 TTCAACATAGTCACG-GTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAA 33728 || | ||| ||| || || ||||| || |||| ||| ||||||||||| ||||| Sbjct 5192 TTTA-CATTCTCAATTGTATCCGAGGATTCGACCTCAAGCGTAATCGTTTTACCAGTTAA 5134 Query 33729 CGTTTTTACAAAGATCTGCATAGT 33752 || || ||||| || ||||| || Sbjct 5133 AGTCTTGACAAAAATTTGCATGGT 5110 >seq4130 Length=21019 Score = 84.2 bits (92), Expect = 1e-11 Identities = 136/193 (70%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 33558 CTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAA 33617 ||| || || || ||||||||||| | ||| || |||| |||| || || || ||||| Sbjct 11864 CTCCTTCTGAATATTGTAATCGGACAATGTACGACCGTCCTCCAGCTGCTTGCCCGCAAA 11923 Query 33618 AATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACAT 33677 |||| |||||||||||| | || | ||||| ||||| ||||| || || || | Sbjct 11924 GATCAGTCGCTGCTGATCTGGTGGAATGCCTTCCTTGTCCTGGATTTT-TGCTTTGACGT 11982 Query 33678 AGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTA 33736 || | || || | ||||| || | || || |||||||| || || || |||| Sbjct 11983 TTTCGATAGTATCAGAAGCCTCCACTTCGAGTGTTATGGTTTTACCCGTCAAAGTCTTTA 12042 Query 33737 CAAAGATCTGCAT 33749 |||| || ||||| Sbjct 12043 CAAAAATTTGCAT 12055 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328683548961600