Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Wuchereria_20bancrofti_20[genbank_20GCA_5F001555675.1_202016-02-09] 5,105 sequences; 90,325,107 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq4130 138 1e-27 seq4574 134 2e-26 seq4330 114 1e-20 seq4209 104 3e-17 seq3175 104 3e-17 >seq4130 Length=21019 Score = 138 bits (152), Expect = 1e-27 Identities = 168/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| ||||| ||||| | || || || || || || || || || ||| | Sbjct 12056 AATGCAAATTTTTGTAAAGACTTTGACGGGTAAAACCATAACACTCGAAGTGGAGGCTTC 11997 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||||| || | ||| | || || ||||| ||||||||||| || ||||| ||||| || Sbjct 11996 TGATACTATCGAAAACGTCAAAGCAAAAATCCAGGACAAGGAAGGCATTCCACCAGATCA 11937 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 |||||| || || ||||| || ||||| || ||||| | |||||| | | || || || Sbjct 11936 GCAGCGACTGATCTTTGCGGGCAAGCAGCTGGAGGACGGTCGTACATTGTCCGATTACAA 11877 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 | | || ||||| || || || || ||||| | || ||||| |||||| Sbjct 11876 TATTCAGAAGGAGTCGACGCTGCACCTAGTTCTTCGCCTTCGTGGTGGA 11828 Score = 125 bits (138), Expect = 8e-24 Identities = 113/142 (80%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||||||||| || ||||| || || ||||| || ||||||||||| ||| | Sbjct 13355 ATGCAAATCTTTGTGAAAACGCTAACTGGAAAGACGATCACTCTTGAGGTGGAGGCTTCA 13296 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| |||| | || || ||||| || ||||||||||| || || ||||||||| Sbjct 13295 GACACAATTGAAAATGTTAAAGCAAAAATACAAGACAAGGAGGGTATCCCGCCAGACCAG 13236 Query 27526 CAGCGTCTAATTTTTGCTGGTA 27547 ||||| || |||||||| |||| Sbjct 13235 CAGCGCCTTATTTTTGCAGGTA 13214 Score = 107 bits (118), Expect = 2e-18 Identities = 109/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||||||||| || || ||||| || || || || || | || || || || | Sbjct 13035 ATGCAAATCTTTGTTAAAACTCTTACTGGTAAAACAATCACATTGGAAGTGGAAGCATCT 12976 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| | ||||| ||||| |||||||||||||||||||| ||||||||| Sbjct 12975 GACACCATCGAGAATGTTAAGGCGAAAATCCAGGACAAGGAGGGAATTCCACCAGACCAG 12916 Query 27526 CAGCGTCTAATTTTTGCTGGTA 27547 ||||| | || || || |||| Sbjct 12915 CAGCGATTGATCTTCGCGGGTA 12894 Score = 104 bits (114), Expect = 3e-17 Identities = 110/145 (76%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| ||||| || || | || |||||||| || || | || |||||| | | Sbjct 12690 ATGCAAATTTTTGTAAAAACATTGACGGGCAAGACGATCACCTTAGAAGTTGAGGCTTCT 12631 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | |||| | ||||| || |||||||| || || || || ||||| || ||| Sbjct 12630 GACACAATCGAAAATGTAAAGGCCAAGATTCAGGATAAAGAAGGGATCCCTCCGGATCAG 12571 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGC 27550 ||||| || |||||||||||||||| Sbjct 12570 CAGCGCCTTATTTTTGCTGGTAAGC 12546 >seq4574 Length=39733 Score = 134 bits (148), Expect = 2e-26 Identities = 167/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| || ||||| ||||| | || || ||||| || || || || || ||| | Sbjct 21043 AATGCAGATTTTTGTAAAGACTTTGACGGGTAAGACCATAACACTAGAAGTGGAGGCTTC 20984 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||||| || | ||| | || || || || ||||||||||| || ||||| ||||| || Sbjct 20983 TGATACTATCGAAAACGTCAAAGCAAAGATCCAGGACAAGGAAGGCATTCCACCAGATCA 20924 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 |||||| || || ||||| || ||||| || ||||| | |||||| | | || ||||| Sbjct 20923 GCAGCGACTGATCTTTGCGGGCAAGCAGCTGGAGGACGGTCGTACATTGTCCGATTATAA 20864 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 | | || ||||| || || || || || || | || ||||| |||||| Sbjct 20863 TATTCAGAAGGAGTCGACGCTGCACCTGGTTCTTCGCCTTCGTGGTGGA 20815 Score = 118 bits (130), Expect = 1e-21 Identities = 113/145 (78%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| ||||| || || | || |||||||| || || | || |||||| | | Sbjct 21677 ATGCAAATTTTTGTAAAAACATTGACGGGCAAGACGATCACCTTAGAAGTTGAGGCTTCT 21618 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| || | |||| ||||||| || |||||||| || || || |||||||| || ||| Sbjct 21617 GATACAATCGAAAATGTGAAGGCCAAGATTCAGGATAAAGAAGGGATTCCTCCGGATCAG 21558 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGC 27550 ||||| || |||||||||||||||| Sbjct 21557 CAGCGCCTCATTTTTGCTGGTAAGC 21533 Score = 116 bits (128), Expect = 4e-21 Identities = 111/142 (78%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||||||||| || || |||||||| || || || || | || || || || | Sbjct 22023 ATGCAAATCTTTGTTAAAACTCTTACCGGTAAAACAATCACATTGGAAGTGGAAGCATCT 21964 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||| | ||| | ||||| ||||| |||||||||||||||||||| ||||||||| Sbjct 21963 GATACCATCGAGAATGTTAAGGCAAAAATCCAGGACAAGGAGGGAATTCCGCCAGACCAG 21904 Query 27526 CAGCGTCTAATTTTTGCTGGTA 27547 ||||| | || || || |||| Sbjct 21903 CAGCGATTGATCTTCGCGGGTA 21882 Score = 107 bits (118), Expect = 2e-18 Identities = 109/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| || || || || || || || || || |||||||| || ||| | Sbjct 22347 ATGCAAATCTTCGTGAAAACACTGACTGGAAAAACAATCACTCTTGAAGTGGAGGCTTCA 22288 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| |||| | || || ||||| || ||||||||||| || || ||||||||| Sbjct 22287 GACACAATTGAAAATGTTAAAGCAAAAATACAAGACAAGGAGGGTATCCCGCCAGACCAG 22228 Query 27526 CAGCGTCTAATTTTTGCTGGTA 27547 ||||| || |||||||| |||| Sbjct 22227 CAGCGCCTTATTTTTGCAGGTA 22206 >seq4330 Length=27005 Score = 114 bits (126), Expect = 1e-20 Identities = 110/141 (78%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || ||||| || ||| | || || ||||| ||||| |||||||| || || Sbjct 21135 ATGCAGATATTTGTGAAAACGTTAACTGGAAAGACGATTACCCTTGAGGTAGAATCGTCC 21194 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| |||| ||| ||||| ||||||||||||| |||||||| ||||| || || ||| Sbjct 21195 GATACTATTGAGAATGTGAAGACTAAAATTCAGGATAAGGAGGGTATTCCACCTGATCAG 21254 Query 27526 CAGCGTCTAATTTTTGCTGGT 27546 || || || |||||||| ||| Sbjct 21255 CAACGACTTATTTTTGCAGGT 21275 >seq4209 Length=23298 Score = 104 bits (114), Expect = 3e-17 Identities = 108/142 (76%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| ||||||||||| | || || || || ||||| |||||||| || || Sbjct 2669 ATGCAAATTTTTGTCAAGACTTTAACTGGTAAAACGATTACGCTTGAGGTCGAATCCTCG 2610 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| |||| ||| | || || ||||| |||||||| || || || || ||||| ||| Sbjct 2609 GATACAATTGAGAATGTAAAAGCGAAAATACAGGACAAAGAAGGCATACCCCCAGATCAG 2550 Query 27526 CAGCGTCTAATTTTTGCTGGTA 27547 ||||| | |||||||| |||| Sbjct 2549 CAGCGGTTGATTTTTGCAGGTA 2528 >seq3175 Length=8402 Score = 104 bits (114), Expect = 3e-17 Identities = 108/142 (76%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| ||||||||||| | || || || || ||||| |||||||| || || Sbjct 5113 ATGCAAATTTTTGTCAAGACTTTAACTGGTAAAACGATTACGCTTGAGGTCGAATCCTCG 5172 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| |||| ||| | || || ||||| |||||||| || || || || ||||| ||| Sbjct 5173 GATACAATTGAGAATGTAAAAGCGAAAATACAGGACAAAGAAGGCATACCCCCAGATCAG 5232 Query 27526 CAGCGTCTAATTTTTGCTGGTA 27547 ||||| | |||||||| |||| Sbjct 5233 CAGCGGTTGATTTTTGCAGGTA 5254 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570274007067600