Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Wuchereria_20bancrofti_20[genbank_20GCA_5F001555675.1_202016-02-09] 5,105 sequences; 90,325,107 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq4130 95.1 8e-15 seq4574 93.3 3e-14 >seq4130 Length=21019 Score = 95.1 bits (104), Expect = 8e-15 Identities = 110/146 (75%), Gaps = 2/146 (1%) Strand=Plus/Plus Query 34565 TACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTT 34624 |||| ||||| || | ||||| ||||| ||||| | |||||||||||| || |||| Sbjct 13214 TACCTGCAAAAATAAGGCGCTGCTGGTCTGGCGGGATACCCTCCTTGTCT-TGTATTTTT 13272 Query 34625 GTTTTAAC-GATAAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTT 34683 | |||||| | |||||||||| |||||| || | || ||||| || || ||| Sbjct 13273 GCTTTAACATTTTCAATTGTGTCTGAAGCCTCCACCTCAAGAGTGATCGTCTTTCCAGTT 13332 Query 34684 AACGTTTTCACAAAAATCTGCATGTT 34709 | |||||||||||| || |||||||| Sbjct 13333 AGCGTTTTCACAAAGATTTGCATGTT 13358 >seq4574 Length=39733 Score = 93.3 bits (102), Expect = 3e-14 Identities = 138/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 34515 CTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAA 34574 |||||| ||||| |||||||| || | ||| || |||| || || || || || ||||| Sbjct 20851 CTCCTTCTGAATATTATAATCGGACAATGTACGACCGTCCTCCAGCTGCTTGCCCGCAAA 20910 Query 34575 TATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGA 34634 || | ||||| || || || || | || |||||||| ||||||| | ||| ||| Sbjct 20911 GATCAGTCGCTGCTGATCTGGTGGAATGCCTTCCTTGTCCTGGATCTTT-GCTTTGACGT 20969 Query 34635 TAAA-ATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCA 34693 | || || || ||||||||| | ||||| || ||||| || || || || | Sbjct 20970 TTTCGATAGTATCAGAAGCCTCCACTTCTAGTGTTATGGTCTTACCCGTCAAAGTCTTTA 21029 Query 34694 CAAAAATCTGCAT 34706 ||||||||||||| Sbjct 21030 CAAAAATCTGCAT 21042 Score = 86.0 bits (94), Expect = 4e-12 Identities = 108/146 (74%), Gaps = 2/146 (1%) Strand=Plus/Plus Query 34565 TACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTT 34624 |||| ||||| || | ||||| ||||| ||||| | |||||||||||| || |||| Sbjct 22206 TACCTGCAAAAATAAGGCGCTGCTGGTCTGGCGGGATACCCTCCTTGTCT-TGTATTTTT 22264 Query 34625 GTTTTAAC-GATAAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTT 34683 | |||||| | |||||||||| ||||||||| | || || ||||| || || Sbjct 22265 GCTTTAACATTTTCAATTGTGTCTGAAGCCTCCACTTCAAGAGTGATTGTTTTTCCAGTC 22324 Query 34684 AACGTTTTCACAAAAATCTGCATGTT 34709 | |||||||| || || |||||||| Sbjct 22325 AGTGTTTTCACGAAGATTTGCATGTT 22350 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314710018409465