Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Wuchereria_20bancrofti_20[genbank_20GCA_5F001555675.1_202016-02-09]
5,105 sequences; 90,325,107 total letters
Query= NC_028636.1
Length=135952
Score E
Sequences producing significant alignments: (Bits) Value
seq4574 131 1e-25
seq4130 125 6e-24
seq4209 91.5 1e-13
seq3175 91.5 1e-13
seq4330 86.0 5e-12
>seq4574
Length=39733
Score = 131 bits (144), Expect = 1e-25
Identities = 165/227 (73%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||| |||||||| ||| |||| || ||| | || || || |||||||| | ||
Sbjct 21042 ATGCAGATTTTTGTAAAGACTTTGACGGGTAAGACCATAACACTAGAAGTGGAGGCTTCT 20983
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
|| | || || | |||||| ||| || || ||||| |||||||| ||||| |||||
Sbjct 20982 GATACTATCGAAAACGTCAAAGCAAAGATCCAGGACAAGGAAGGCATTCCACCAGATCAG 20923
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
||||| | || | || ||||| || |||| ||| || || | |||||||| ||
Sbjct 20922 CAGCGACTGATCTTTGCGGGCAAGCAGCTGGAGGACGGTCGTACATTGTCCGATTATAAT 20863
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214
||||| ||||||||||| | || ||||| | || | || |||||
Sbjct 20862 ATTCAGAAGGAGTCGACGCTGCACCTGGTTCTTCGCCTTCGTGGTGG 20816
Score = 84.2 bits (92), Expect = 2e-11
Identities = 94/126 (75%), Gaps = 0/126 (0%)
Strand=Plus/Minus
Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046
|||||| || || || ||||| ||||| || || | || |||||||||||||| | ||
Sbjct 22348 CATGCAAATCTTCGTGAAAACACTGACTGGAAAAACAATCACTCTTGAAGTGGAGGCTTC 22289
Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106
||| | ||||| | || ||| |||||| |||||||| || || || || || || ||
Sbjct 22288 AGACACAATTGAAAATGTTAAAGCAAAAATACAAGACAAGGAGGGTATCCCGCCAGACCA 22229
Query 27107 ACAGCG 27112
|||||
Sbjct 22228 GCAGCG 22223
>seq4130
Length=21019
Score = 125 bits (138), Expect = 6e-24
Identities = 146/197 (74%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
||||| || |||||||| ||| |||| || || | || || || |||||||| | ||
Sbjct 12055 ATGCAAATTTTTGTAAAGACTTTGACGGGTAAAACCATAACACTCGAAGTGGAGGCTTCT 11996
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
|| | || || | |||||| |||||| || ||||| |||||||| ||||| |||||
Sbjct 11995 GATACTATCGAAAACGTCAAAGCAAAAATCCAGGACAAGGAAGGCATTCCACCAGATCAG 11936
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
||||| | || | || ||||| || |||| ||| || || | |||||||||||
Sbjct 11935 CAGCGACTGATCTTTGCGGGCAAGCAGCTGGAGGACGGTCGTACATTGTCCGATTACAAT 11876
Query 27168 ATTCAAAAGGAGTCGAC 27184
||||| |||||||||||
Sbjct 11875 ATTCAGAAGGAGTCGAC 11859
>seq4209
Length=23298
Score = 91.5 bits (100), Expect = 1e-13
Identities = 100/133 (75%), Gaps = 0/133 (0%)
Strand=Plus/Minus
Query 26986 CCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGT 27045
||||||| || ||||| || ||| | || || || | ||||| ||||| || ||| | |
Sbjct 2671 CCATGCAAATTTTTGTCAAGACTTTAACTGGTAAAACGATTACGCTTGAGGTCGAATCCT 2612
Query 27046 CCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATC 27105
| || | ||||||| || ||| ||||| || ||||||||||||||||| || ||||
Sbjct 2611 CGGATACAATTGAGAATGTAAAAGCGAAAATACAGGACAAAGAAGGCATACCCCCAGATC 2552
Query 27106 AACAGCGTTTAAT 27118
| ||||| || ||
Sbjct 2551 AGCAGCGGTTGAT 2539
>seq3175
Length=8402
Score = 91.5 bits (100), Expect = 1e-13
Identities = 100/133 (75%), Gaps = 0/133 (0%)
Strand=Plus/Plus
Query 26986 CCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGT 27045
||||||| || ||||| || ||| | || || || | ||||| ||||| || ||| | |
Sbjct 5111 CCATGCAAATTTTTGTCAAGACTTTAACTGGTAAAACGATTACGCTTGAGGTCGAATCCT 5170
Query 27046 CCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATC 27105
| || | ||||||| || ||| ||||| || ||||||||||||||||| || ||||
Sbjct 5171 CGGATACAATTGAGAATGTAAAAGCGAAAATACAGGACAAAGAAGGCATACCCCCAGATC 5230
Query 27106 AACAGCGTTTAAT 27118
| ||||| || ||
Sbjct 5231 AGCAGCGGTTGAT 5243
>seq4330
Length=27005
Score = 86.0 bits (94), Expect = 5e-12
Identities = 94/125 (75%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||||||||| ||||| | || || ||| | ||||| ||||| || ||| |||||
Sbjct 21135 ATGCAGATATTTGTGAAAACGTTAACTGGAAAGACGATTACCCTTGAGGTAGAATCGTCC 21194
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
|| | ||||||| || || |||||||| || || || || || ||||| |||||
Sbjct 21195 GATACTATTGAGAATGTGAAGACTAAAATTCAGGATAAGGAGGGTATTCCACCTGATCAG 21254
Query 27108 CAGCG 27112
|| ||
Sbjct 21255 CAACG 21259
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 434890646769600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |