Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Wuchereria_20bancrofti_20[genbank_20GCA_5F001555675.1_202016-02-09]
5,105 sequences; 90,325,107 total letters
Query= NC_029692.1
Length=362276
Score E
Sequences producing significant alignments: (Bits) Value
seq4574 163 7e-35
seq4130 150 4e-31
seq4330 91.5 3e-13
>seq4574
Length=39733
Score = 163 bits (180), Expect = 7e-35
Identities = 170/223 (76%), Gaps = 0/223 (0%)
Strand=Plus/Plus
Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952
|||||| | || || ||||| || || ||||| || || || |||||||| | | ||
Sbjct 20821 ACGAAGGCGAAGAACCAGGTGCAGCGTCGACTCCTTCTGAATATTATAATCGGACAATGT 20880
Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012
| || || |||||||||||||| || ||||| || || || || || || |||| ||
Sbjct 20881 ACGACCGTCCTCCAGCTGCTTGCCCGCAAAGATCAGTCGCTGCTGATCTGGTGGAATGCC 20940
Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072
||||||||||||||||||| ||| ||||||||||| || ||||| || || || ||
Sbjct 20941 TTCCTTGTCCTGGATCTTTGCTTTGACGTTTTCGATAGTATCAGAAGCCTCCACTTCTAG 21000
Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115
|| || ||||| ||||| | |||||||||||| | |||||||
Sbjct 21001 TGTTATGGTCTTACCCGTCAAAGTCTTTACAAAAATCTGCATT 21043
Score = 95.1 bits (104), Expect = 3e-14
Identities = 108/145 (74%), Gaps = 0/145 (0%)
Strand=Plus/Plus
Query 210970 GCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCT 211029
|||| || || || || ||||| || || || ||||||| ||||| || ||||| ||||
Sbjct 21533 GCTTACCAGCAAAAATGAGGCGCTGCTGATCCGGAGGAATCCCTTCTTTATCCTGAATCT 21592
Query 211030 TTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCG 211089
| ||||| |||||||| || ||||| ||||| || | ||||||||||| ||||
Sbjct 21593 TGGCCTTCACATTTTCGATTGTATCAGAAGCCTCAACTTCTAAGGTGATCGTCTTGCCCG 21652
Query 211090 TGAGAGTCTTTACAAACACCTGCAT 211114
| | || |||||||| | |||||
Sbjct 21653 TCAATGTTTTTACAAAAATTTGCAT 21677
Score = 91.5 bits (100), Expect = 3e-13
Identities = 104/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 210975 CCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGT 211034
|| |||||||| | || || ||||| || |||| ||| |||||||||||||| |||
Sbjct 21884 CCCGCGAAGATCAATCGCTGCTGGTCTGGCGGAATTCCCTCCTTGTCCTGGATTTTTGCC 21943
Query 211035 TTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGA 211094
|| || || |||||||| ||||| ||| || || | ||||| || || || || |||
Sbjct 21944 TTAACATTCTCGATGGTATCAGATGCTTCCACTTCCAATGTGATTGTTTTACCGGTAAGA 22003
Query 211095 GTCTTTACAAACACCTGCAT 211114
|| || ||||| | |||||
Sbjct 22004 GTTTTAACAAAGATTTGCAT 22023
>seq4130
Length=21019
Score = 150 bits (166), Expect = 4e-31
Identities = 167/223 (75%), Gaps = 0/223 (0%)
Strand=Plus/Plus
Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952
|||||| | || || ||||| || || ||||| || || || || ||||| | | ||
Sbjct 11834 ACGAAGGCGAAGAACTAGGTGCAGCGTCGACTCCTTCTGAATATTGTAATCGGACAATGT 11893
Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012
| || || |||||||||||||| || ||||| || || || || || || |||| ||
Sbjct 11894 ACGACCGTCCTCCAGCTGCTTGCCCGCAAAGATCAGTCGCTGCTGATCTGGTGGAATGCC 11953
Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072
||||||||||||||| ||| ||| ||||||||||| || ||||| || || |||||
Sbjct 11954 TTCCTTGTCCTGGATTTTTGCTTTGACGTTTTCGATAGTATCAGAAGCCTCCACTTCGAG 12013
Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115
|| || || || ||||| | |||||||||||| | ||||||
Sbjct 12014 TGTTATGGTTTTACCCGTCAAAGTCTTTACAAAAATTTGCATT 12056
Score = 100 bits (110), Expect = 7e-16
Identities = 108/143 (76%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 210975 CCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGT 211034
||||| || |||||||| || ||||| || || | || |||||||| || || ||| |
Sbjct 13216 CCTGCAAAAATAAGGCGCTGCTGGTCTGGCGGGATACCCTCCTTGTCTTGTATTTTTGCT 13275
Query 211035 TTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGA 211094
|| || ||||| || ||||| || || ||||| ||||||||||||||||| || ||
Sbjct 13276 TTAACATTTTCAATTGTGTCTGAAGCCTCCACCTCAAGAGTGATCGTCTTTCCAGTTAGC 13335
Query 211095 GTCTTTACAAACACCTGCATTTT 211117
|| || ||||| | ||||| ||
Sbjct 13336 GTTTTCACAAAGATTTGCATGTT 13358
Score = 95.1 bits (104), Expect = 3e-14
Identities = 108/145 (74%), Gaps = 0/145 (0%)
Strand=Plus/Plus
Query 210970 GCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCT 211029
|||| || || || |||||||| || || || ||||| | ||||| || ||||| ||||
Sbjct 12546 GCTTACCAGCAAAAATAAGGCGCTGCTGATCCGGAGGGATCCCTTCTTTATCCTGAATCT 12605
Query 211030 TTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCG 211089
| || || |||||||| |||||||| ||||| || | ||||||||||| ||||
Sbjct 12606 TGGCCTTTACATTTTCGATTGTGTCAGAAGCCTCAACTTCTAAGGTGATCGTCTTGCCCG 12665
Query 211090 TGAGAGTCTTTACAAACACCTGCAT 211114
| | || |||||||| | |||||
Sbjct 12666 TCAATGTTTTTACAAAAATTTGCAT 12690
Score = 91.5 bits (100), Expect = 3e-13
Identities = 104/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 210975 CCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGT 211034
|| |||||||| | || || ||||| || |||| ||| |||||||||||||| ||
Sbjct 12896 CCCGCGAAGATCAATCGCTGCTGGTCTGGTGGAATTCCCTCCTTGTCCTGGATTTTCGCC 12955
Query 211035 TTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGA 211094
|| || || |||||||||||||| ||| || || | ||||| || || || || |||
Sbjct 12956 TTAACATTCTCGATGGTGTCAGATGCTTCCACTTCCAATGTGATTGTTTTACCAGTAAGA 13015
Query 211095 GTCTTTACAAACACCTGCAT 211114
|| || ||||| | |||||
Sbjct 13016 GTTTTAACAAAGATTTGCAT 13035
>seq4330
Length=27005
Score = 91.5 bits (100), Expect = 3e-13
Identities = 108/144 (75%), Gaps = 2/144 (1%)
Strand=Plus/Minus
Query 210975 CCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGT 211034
||||| || ||||| ||||| || ||||| |||| || ||||| ||||| || ||| ||
Sbjct 21274 CCTGCAAAAATAAGTCGTTGCTGATCAGGTGGAATACCCTCCTTATCCTGAAT-TTTAGT 21216
Query 211035 -TTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAG 211093
||||| || || || || || || ||| ||||| || || ||||||||||| || |
Sbjct 21215 CTTCACATTCTCAATAGTATCGGACGATTCTACCTCAAGGGTAATCGTCTTTCCAGTTAA 21156
Query 211094 AGTCTTTACAAACACCTGCATTTT 211117
|| || ||||| | |||||| ||
Sbjct 21155 CGTTTTCACAAATATCTGCATCTT 21132
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1159076182403325
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |