Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Wuchereria_20bancrofti_20[genbank_20GCA_5F001555675.1_202016-02-09] 5,105 sequences; 90,325,107 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq4574 91.5 1e-13 seq4209 82.4 5e-11 seq4130 82.4 5e-11 seq3175 82.4 5e-11 >seq4574 Length=39733 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||||||||| || || || | ||||| || || || || || ||||| || | | Sbjct 21043 AATGCAGATTTTTGTAAAGACTTTGACGGGTAAGACCATAACACTAGAAGTGGAGGCTTC 20984 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || ||| | |||| | ||| ||| || ||||| ||||| | || |||||||| Sbjct 20983 TGATACTATCGAAAACGTCAAAGCAAAGATCCAGGACAAGGAAGGCATTCCACCAGATCA 20924 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||| | || ||||| ||||| || ||||| |||| || || || |||||| || Sbjct 20923 GCAGCGACTGATCTTTGCGGGCAAGCAGCTGGAGGACGGTCGTACATTGTCCGATTATAA 20864 Query 23790 CATACAAAAAGAGTCCAC 23807 || || || ||||| || Sbjct 20863 TATTCAGAAGGAGTCGAC 20846 >seq4209 Length=23298 Score = 82.4 bits (90), Expect = 5e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| ||||| || || || | || || |||||||| || || || || || ||| || Sbjct 2669 ATGCAAATTTTTGTCAAGACTTTAACTGGTAAAACGATTACGCTTGAGGTCGAATCCTCG 2610 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || |||| | ||||| ||||| ||||||||||| |||| |||||||| Sbjct 2609 GATACAATTGAGAATGTAAAAGCGAAAATACAGGACAAAGAAGGCATACCCCCAGATCAG 2550 Query 23731 CAGCGTTTAATATTTGCCGG 23750 ||||| || || ||||| || Sbjct 2549 CAGCGGTTGATTTTTGCAGG 2530 >seq4130 Length=21019 Score = 82.4 bits (90), Expect = 5e-11 Identities = 106/144 (74%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || ||||| || || || ||||| || || ||||| ||||||||||| || || || | Sbjct 13358 AACATGCAAATCTTTGTGAAAACGCTAACTGGAAAGACGATCACTCTTGAGGTGGAGGCT 13299 Query 23668 ACGGACACTGTTG-AAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | ||||| ||| |||| ||||| | |||||| ||||| || ||| | |||||||| Sbjct 13298 TCAGACACAATTGAAAATGTTAAAGC-AAAAATACAAGACAAGGAGGGTATCCCGCCAGA 13240 Query 23727 TCAACAGCGTTTAATATTTGCCGG 23750 || ||||| | || ||||| || Sbjct 13239 CCAGCAGCGCCTTATTTTTGCAGG 13216 >seq3175 Length=8402 Score = 82.4 bits (90), Expect = 5e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| ||||| || || || | || || |||||||| || || || || || ||| || Sbjct 5113 ATGCAAATTTTTGTCAAGACTTTAACTGGTAAAACGATTACGCTTGAGGTCGAATCCTCG 5172 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || |||| | ||||| ||||| ||||||||||| |||| |||||||| Sbjct 5173 GATACAATTGAGAATGTAAAAGCGAAAATACAGGACAAAGAAGGCATACCCCCAGATCAG 5232 Query 23731 CAGCGTTTAATATTTGCCGG 23750 ||||| || || ||||| || Sbjct 5233 CAGCGGTTGATTTTTGCAGG 5252 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337988569993340