Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Wuchereria_20bancrofti_20[genbank_20GCA_5F001555675.1_202016-02-09]
5,105 sequences; 90,325,107 total letters
Query= NC_029997.1
Length=105667
Score E
Sequences producing significant alignments: (Bits) Value
seq4574 91.5 1e-13
seq4209 82.4 5e-11
seq4130 82.4 5e-11
seq3175 82.4 5e-11
>seq4574
Length=39733
Score = 91.5 bits (100), Expect = 1e-13
Identities = 139/198 (70%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669
|||||||||||| || || || | ||||| || || || || || ||||| || | |
Sbjct 21043 AATGCAGATTTTTGTAAAGACTTTGACGGGTAAGACCATAACACTAGAAGTGGAGGCTTC 20984
Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
|| ||| | |||| | ||| ||| || ||||| ||||| | || ||||||||
Sbjct 20983 TGATACTATCGAAAACGTCAAAGCAAAGATCCAGGACAAGGAAGGCATTCCACCAGATCA 20924
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
||||| | || ||||| ||||| || ||||| |||| || || || |||||| ||
Sbjct 20923 GCAGCGACTGATCTTTGCGGGCAAGCAGCTGGAGGACGGTCGTACATTGTCCGATTATAA 20864
Query 23790 CATACAAAAAGAGTCCAC 23807
|| || || ||||| ||
Sbjct 20863 TATTCAGAAGGAGTCGAC 20846
>seq4209
Length=23298
Score = 82.4 bits (90), Expect = 5e-11
Identities = 102/140 (73%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
||||| ||||| || || || | || || |||||||| || || || || || ||| ||
Sbjct 2669 ATGCAAATTTTTGTCAAGACTTTAACTGGTAAAACGATTACGCTTGAGGTCGAATCCTCG 2610
Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730
|| || |||| | ||||| ||||| ||||||||||| |||| ||||||||
Sbjct 2609 GATACAATTGAGAATGTAAAAGCGAAAATACAGGACAAAGAAGGCATACCCCCAGATCAG 2550
Query 23731 CAGCGTTTAATATTTGCCGG 23750
||||| || || ||||| ||
Sbjct 2549 CAGCGGTTGATTTTTGCAGG 2530
>seq4130
Length=21019
Score = 82.4 bits (90), Expect = 5e-11
Identities = 106/144 (74%), Gaps = 2/144 (1%)
Strand=Plus/Minus
Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667
|| ||||| || || || ||||| || || ||||| ||||||||||| || || || |
Sbjct 13358 AACATGCAAATCTTTGTGAAAACGCTAACTGGAAAGACGATCACTCTTGAGGTGGAGGCT 13299
Query 23668 ACGGACACTGTTG-AAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726
| ||||| ||| |||| ||||| | |||||| ||||| || ||| | ||||||||
Sbjct 13298 TCAGACACAATTGAAAATGTTAAAGC-AAAAATACAAGACAAGGAGGGTATCCCGCCAGA 13240
Query 23727 TCAACAGCGTTTAATATTTGCCGG 23750
|| ||||| | || ||||| ||
Sbjct 13239 CCAGCAGCGCCTTATTTTTGCAGG 13216
>seq3175
Length=8402
Score = 82.4 bits (90), Expect = 5e-11
Identities = 102/140 (73%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
||||| ||||| || || || | || || |||||||| || || || || || ||| ||
Sbjct 5113 ATGCAAATTTTTGTCAAGACTTTAACTGGTAAAACGATTACGCTTGAGGTCGAATCCTCG 5172
Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730
|| || |||| | ||||| ||||| ||||||||||| |||| ||||||||
Sbjct 5173 GATACAATTGAGAATGTAAAAGCGAAAATACAGGACAAAGAAGGCATACCCCCAGATCAG 5232
Query 23731 CAGCGTTTAATATTTGCCGG 23750
||||| || || ||||| ||
Sbjct 5233 CAGCGGTTGATTTTTGCAGG 5252
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 337988569993340
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |