Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Wuchereria_20bancrofti_20[genbank_20GCA_5F001555675.1_202016-02-09]
5,105 sequences; 90,325,107 total letters
Query= NC_030230.1
Length=372707
Score E
Sequences producing significant alignments: (Bits) Value
seq4574 141 2e-28
seq4130 140 8e-28
seq5104 95.1 3e-14
>seq4574
Length=39733
Score = 141 bits (156), Expect = 2e-28
Identities = 165/223 (74%), Gaps = 0/223 (0%)
Strand=Plus/Plus
Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551
|||||| | || || ||||| || || || || || || | ||| ||||||| ||| ||
Sbjct 20821 ACGAAGGCGAAGAACCAGGTGCAGCGTCGACTCCTTCTGAATATTATAATCGGACAATGT 20880
Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611
| || || || |||||||| || || ||||| ||||| || || || || ||||| ||
Sbjct 20881 ACGACCGTCCTCCAGCTGCTTGCCCGCAAAGATCAGTCGCTGCTGATCTGGTGGAATGCC 20940
Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671
||||||||| ||||||||| || || |||||| || || || | ||||| ||||
Sbjct 20941 TTCCTTGTCCTGGATCTTTGCTTTGACGTTTTCGATAGTATCAGAAGCCTCCACTTCTAG 21000
Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714
|| || ||||| ||||||||||| |||| || | ||||||
Sbjct 21001 TGTTATGGTCTTACCCGTCAAAGTCTTTACAAAAATCTGCATT 21043
Score = 109 bits (120), Expect = 1e-18
Identities = 111/145 (77%), Gaps = 0/145 (0%)
Strand=Plus/Plus
Query 225569 GCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCT 225628
|||| ||||| || || || || || || || || ||||| ||||| || || || ||||
Sbjct 21533 GCTTACCAGCAAAAATGAGGCGCTGCTGATCCGGAGGAATCCCTTCTTTATCCTGAATCT 21592
Query 225629 TTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCG 225688
| ||||||| |||||| || || || | || || ||||| ||||||||||||||||
Sbjct 21593 TGGCCTTCACATTTTCGATTGTATCAGAAGCCTCAACTTCTAAGGTGATCGTCTTGCCCG 21652
Query 225689 TCAAAGTTTTTATGAACACTTGCAT 225713
|||| ||||||| || | ||||||
Sbjct 21653 TCAATGTTTTTACAAAAATTTGCAT 21677
Score = 95.1 bits (104), Expect = 3e-14
Identities = 109/144 (76%), Gaps = 2/144 (1%)
Strand=Plus/Plus
Query 225574 CCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC 225633
|| || || ||||| || || ||||| ||||| ||||| ||||||||||| || ||||||
Sbjct 22208 CCTGCAAAAATAAGGCGCTGCTGGTCTGGCGGGATACCCTCCTTGTCTTGTAT-TTTTGC 22266
Query 225634 -TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAA 225692
|| ||| ||| || |||||||| | ||||| || | ||||| || || || ||||
Sbjct 22267 TTTAACATTTTCAATTGTGTCTGAAGCCTCCACTTCAAGAGTGATTGTTTTTCCAGTCAG 22326
Query 225693 AGTTTTTATGAACACTTGCATTTT 225716
||||| | ||| | |||||| ||
Sbjct 22327 TGTTTTCACGAAGATTTGCATGTT 22350
>seq4130
Length=21019
Score = 140 bits (154), Expect = 8e-28
Identities = 167/224 (75%), Gaps = 2/224 (1%)
Strand=Plus/Plus
Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551
|||||| | || || ||||| || || || || || || | ||||||||||| ||| ||
Sbjct 11834 ACGAAGGCGAAGAACTAGGTGCAGCGTCGACTCCTTCTGAATATTGTAATCGGACAATGT 11893
Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611
| || || || |||||||| || || ||||| ||||| || || || || ||||| ||
Sbjct 11894 ACGACCGTCCTCCAGCTGCTTGCCCGCAAAGATCAGTCGCTGCTGATCTGGTGGAATGCC 11953
Query 225612 TTCCTTGTCTTGGATCTTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTA 225670
||||||||| ||||| |||||| || || |||||| || || || | ||||| || |
Sbjct 11954 TTCCTTGTCCTGGAT-TTTTGCTTTGACGTTTTCGATAGTATCAGAAGCCTCCACTTCGA 12012
Query 225671 ACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714
|| || || || ||||||||||| |||| || | |||||||
Sbjct 12013 GTGTTATGGTTTTACCCGTCAAAGTCTTTACAAAAATTTGCATT 12056
Score = 109 bits (120), Expect = 1e-18
Identities = 111/145 (77%), Gaps = 0/145 (0%)
Strand=Plus/Plus
Query 225569 GCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCT 225628
|||| ||||| || ||||| || || || || || || || ||||| || || || ||||
Sbjct 12546 GCTTACCAGCAAAAATAAGGCGCTGCTGATCCGGAGGGATCCCTTCTTTATCCTGAATCT 12605
Query 225629 TTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCG 225688
| ||| ||| |||||| ||||| || | || || ||||| ||||||||||||||||
Sbjct 12606 TGGCCTTTACATTTTCGATTGTGTCAGAAGCCTCAACTTCTAAGGTGATCGTCTTGCCCG 12665
Query 225689 TCAAAGTTTTTATGAACACTTGCAT 225713
|||| ||||||| || | ||||||
Sbjct 12666 TCAATGTTTTTACAAAAATTTGCAT 12690
Score = 95.1 bits (104), Expect = 3e-14
Identities = 105/140 (75%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 225574 CCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC 225633
|| |||||||| | ||| || ||||| || ||||| || |||||||| ||||| || |
Sbjct 12896 CCCGCGAAGATCAATCGCTGCTGGTCTGGTGGAATTCCCTCCTTGTCCTGGATTTTCGCC 12955
Query 225634 TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAA 225693
|| ||| ||||||||||| || | |||||| || || ||||| || || || || | |
Sbjct 12956 TTAACATTCTCGATGGTGTCAGATGCTTCCACTTCCAATGTGATTGTTTTACCAGTAAGA 13015
Query 225694 GTTTTTATGAACACTTGCAT 225713
||||| | || | ||||||
Sbjct 13016 GTTTTAACAAAGATTTGCAT 13035
Score = 95.1 bits (104), Expect = 3e-14
Identities = 109/144 (76%), Gaps = 2/144 (1%)
Strand=Plus/Plus
Query 225574 CCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC 225633
|| || || ||||| || || ||||| ||||| ||||| ||||||||||| || ||||||
Sbjct 13216 CCTGCAAAAATAAGGCGCTGCTGGTCTGGCGGGATACCCTCCTTGTCTTGTAT-TTTTGC 13274
Query 225634 -TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAA 225692
|| ||| ||| || |||||||| | ||||| || | ||||||||||| || || |
Sbjct 13275 TTTAACATTTTCAATTGTGTCTGAAGCCTCCACCTCAAGAGTGATCGTCTTTCCAGTTAG 13334
Query 225693 AGTTTTTATGAACACTTGCATTTT 225716
||||| | || | |||||| ||
Sbjct 13335 CGTTTTCACAAAGATTTGCATGTT 13358
>seq5104
Length=557454
Score = 95.1 bits (104), Expect = 3e-14
Identities = 84/105 (80%), Gaps = 0/105 (0%)
Strand=Plus/Minus
Query 4471 AATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACCT 4530
|||||||||||||| || || || || ||||| || ||||||||||| ||||| || ||
Sbjct 101266 AATATTTGACCATCTGTGATTGAAATTACATTGGTGGGGATATAAGCGGAAACGTCGCCG 101207
Query 4531 GCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCA 4575
||||| ||||| | ||| || | ||||| ||||| ||||| |||
Sbjct 101206 GCTTGAGTTTCAATAACTGGCAGTGCTGTAAGTGAGCCACCCCCA 101162
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1192453199142870
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |