Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Wuchereria_20bancrofti_20[genbank_20GCA_5F001555675.1_202016-02-09] 5,105 sequences; 90,325,107 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq4574 141 2e-28 seq4130 140 8e-28 seq5104 95.1 3e-14 >seq4574 Length=39733 Score = 141 bits (156), Expect = 2e-28 Identities = 165/223 (74%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || || ||||| || || || || || || | ||| ||||||| ||| || Sbjct 20821 ACGAAGGCGAAGAACCAGGTGCAGCGTCGACTCCTTCTGAATATTATAATCGGACAATGT 20880 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || || || |||||||| || || ||||| ||||| || || || || ||||| || Sbjct 20881 ACGACCGTCCTCCAGCTGCTTGCCCGCAAAGATCAGTCGCTGCTGATCTGGTGGAATGCC 20940 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||||||||| ||||||||| || || |||||| || || || | ||||| |||| Sbjct 20941 TTCCTTGTCCTGGATCTTTGCTTTGACGTTTTCGATAGTATCAGAAGCCTCCACTTCTAG 21000 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 || || ||||| ||||||||||| |||| || | |||||| Sbjct 21001 TGTTATGGTCTTACCCGTCAAAGTCTTTACAAAAATCTGCATT 21043 Score = 109 bits (120), Expect = 1e-18 Identities = 111/145 (77%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 225569 GCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCT 225628 |||| ||||| || || || || || || || || ||||| ||||| || || || |||| Sbjct 21533 GCTTACCAGCAAAAATGAGGCGCTGCTGATCCGGAGGAATCCCTTCTTTATCCTGAATCT 21592 Query 225629 TTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCG 225688 | ||||||| |||||| || || || | || || ||||| |||||||||||||||| Sbjct 21593 TGGCCTTCACATTTTCGATTGTATCAGAAGCCTCAACTTCTAAGGTGATCGTCTTGCCCG 21652 Query 225689 TCAAAGTTTTTATGAACACTTGCAT 225713 |||| ||||||| || | |||||| Sbjct 21653 TCAATGTTTTTACAAAAATTTGCAT 21677 Score = 95.1 bits (104), Expect = 3e-14 Identities = 109/144 (76%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 225574 CCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC 225633 || || || ||||| || || ||||| ||||| ||||| ||||||||||| || |||||| Sbjct 22208 CCTGCAAAAATAAGGCGCTGCTGGTCTGGCGGGATACCCTCCTTGTCTTGTAT-TTTTGC 22266 Query 225634 -TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAA 225692 || ||| ||| || |||||||| | ||||| || | ||||| || || || |||| Sbjct 22267 TTTAACATTTTCAATTGTGTCTGAAGCCTCCACTTCAAGAGTGATTGTTTTTCCAGTCAG 22326 Query 225693 AGTTTTTATGAACACTTGCATTTT 225716 ||||| | ||| | |||||| || Sbjct 22327 TGTTTTCACGAAGATTTGCATGTT 22350 >seq4130 Length=21019 Score = 140 bits (154), Expect = 8e-28 Identities = 167/224 (75%), Gaps = 2/224 (1%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || || ||||| || || || || || || | ||||||||||| ||| || Sbjct 11834 ACGAAGGCGAAGAACTAGGTGCAGCGTCGACTCCTTCTGAATATTGTAATCGGACAATGT 11893 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || || || |||||||| || || ||||| ||||| || || || || ||||| || Sbjct 11894 ACGACCGTCCTCCAGCTGCTTGCCCGCAAAGATCAGTCGCTGCTGATCTGGTGGAATGCC 11953 Query 225612 TTCCTTGTCTTGGATCTTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTA 225670 ||||||||| ||||| |||||| || || |||||| || || || | ||||| || | Sbjct 11954 TTCCTTGTCCTGGAT-TTTTGCTTTGACGTTTTCGATAGTATCAGAAGCCTCCACTTCGA 12012 Query 225671 ACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 || || || || ||||||||||| |||| || | ||||||| Sbjct 12013 GTGTTATGGTTTTACCCGTCAAAGTCTTTACAAAAATTTGCATT 12056 Score = 109 bits (120), Expect = 1e-18 Identities = 111/145 (77%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 225569 GCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCT 225628 |||| ||||| || ||||| || || || || || || || ||||| || || || |||| Sbjct 12546 GCTTACCAGCAAAAATAAGGCGCTGCTGATCCGGAGGGATCCCTTCTTTATCCTGAATCT 12605 Query 225629 TTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCG 225688 | ||| ||| |||||| ||||| || | || || ||||| |||||||||||||||| Sbjct 12606 TGGCCTTTACATTTTCGATTGTGTCAGAAGCCTCAACTTCTAAGGTGATCGTCTTGCCCG 12665 Query 225689 TCAAAGTTTTTATGAACACTTGCAT 225713 |||| ||||||| || | |||||| Sbjct 12666 TCAATGTTTTTACAAAAATTTGCAT 12690 Score = 95.1 bits (104), Expect = 3e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 225574 CCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC 225633 || |||||||| | ||| || ||||| || ||||| || |||||||| ||||| || | Sbjct 12896 CCCGCGAAGATCAATCGCTGCTGGTCTGGTGGAATTCCCTCCTTGTCCTGGATTTTCGCC 12955 Query 225634 TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAA 225693 || ||| ||||||||||| || | |||||| || || ||||| || || || || | | Sbjct 12956 TTAACATTCTCGATGGTGTCAGATGCTTCCACTTCCAATGTGATTGTTTTACCAGTAAGA 13015 Query 225694 GTTTTTATGAACACTTGCAT 225713 ||||| | || | |||||| Sbjct 13016 GTTTTAACAAAGATTTGCAT 13035 Score = 95.1 bits (104), Expect = 3e-14 Identities = 109/144 (76%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 225574 CCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC 225633 || || || ||||| || || ||||| ||||| ||||| ||||||||||| || |||||| Sbjct 13216 CCTGCAAAAATAAGGCGCTGCTGGTCTGGCGGGATACCCTCCTTGTCTTGTAT-TTTTGC 13274 Query 225634 -TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAA 225692 || ||| ||| || |||||||| | ||||| || | ||||||||||| || || | Sbjct 13275 TTTAACATTTTCAATTGTGTCTGAAGCCTCCACCTCAAGAGTGATCGTCTTTCCAGTTAG 13334 Query 225693 AGTTTTTATGAACACTTGCATTTT 225716 ||||| | || | |||||| || Sbjct 13335 CGTTTTCACAAAGATTTGCATGTT 13358 >seq5104 Length=557454 Score = 95.1 bits (104), Expect = 3e-14 Identities = 84/105 (80%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 4471 AATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACCT 4530 |||||||||||||| || || || || ||||| || ||||||||||| ||||| || || Sbjct 101266 AATATTTGACCATCTGTGATTGAAATTACATTGGTGGGGATATAAGCGGAAACGTCGCCG 101207 Query 4531 GCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCA 4575 ||||| ||||| | ||| || | ||||| ||||| ||||| ||| Sbjct 101206 GCTTGAGTTTCAATAACTGGCAGTGCTGTAAGTGAGCCACCCCCA 101162 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192453199142870