Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Wuchereria_20bancrofti_20[genbank_20GCA_5F001555675.1_202016-02-09] 5,105 sequences; 90,325,107 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq4574 168 1e-36 seq4130 159 7e-34 >seq4574 Length=39733 Score = 168 bits (186), Expect = 1e-36 Identities = 174/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 |||||||| |||||||| ||||| || | ||| || || || || || || || | Sbjct 20816 CCACCACGAAGGCGAAGAACCAGGTGCAGCGTCGACTCCTTCTGAATATTATAATCGGAC 20875 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 | || || || ||||| || || || || |||||||||| || || || || ||| Sbjct 20876 AATGTACGACCGTCCTCCAGCTGCTTGCCCGCAAAGATCAGTCGCTGCTGATCTGGTGGA 20935 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || || |||||||| |||||||||||||| ||| | |||||||| || ||||| || ||| Sbjct 20936 ATGCCTTCCTTGTCCTGGATCTTTGCTTTGACGTTTTCGATAGTATCAGAAGCCTCCACT 20995 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATT 283100 || || || || |||||||||||||||||||| || || ||||||||| Sbjct 20996 TCTAGTGTTATGGTCTTACCCGTCAAAGTCTTTACAAAAATCTGCATT 21043 Score = 105 bits (116), Expect = 1e-17 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019 || ||||| || | || || ||||| ||| ||||||||||||||||| || |||||| Sbjct 22208 CCTGCAAAAATAAGGCGCTGCTGGTCTGGCGGGATACCCTCCTTGTCTTGTATTTTTGCT 22267 Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079 || || | || || ||||| ||||| || ||||| |||||||| || || || |||| Sbjct 22268 TTAACATTTTCAATTGTGTCTGAAGCCTCCACTTCAAGAGTGATTGTTTTTCCAGTCAGT 22327 Query 283080 GTCTTAACGAATATCTGCATTTT 283102 || || ||||| || ||||| || Sbjct 22328 GTTTTCACGAAGATTTGCATGTT 22350 Score = 104 bits (114), Expect = 5e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019 || || |||||||| || || ||||| |||||| ||||||||||| ||||| ||||| Sbjct 21884 CCCGCGAAGATCAATCGCTGCTGGTCTGGCGGAATTCCCTCCTTGTCCTGGATTTTTGCC 21943 Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079 || || | ||||| || || || ||||| ||||| | ||||| || ||||| || | | Sbjct 21944 TTAACATTCTCGATGGTATCAGATGCTTCCACTTCCAATGTGATTGTTTTACCGGTAAGA 22003 Query 283080 GTCTTAACGAATATCTGCAT 283099 || ||||| || || ||||| Sbjct 22004 GTTTTAACAAAGATTTGCAT 22023 >seq4130 Length=21019 Score = 159 bits (176), Expect = 7e-34 Identities = 172/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 |||||||| |||||||| || || || | ||| || || || || ||||| || | Sbjct 11829 CCACCACGAAGGCGAAGAACTAGGTGCAGCGTCGACTCCTTCTGAATATTGTAATCGGAC 11888 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 | || || || ||||| || || || || |||||||||| || || || || ||| Sbjct 11889 AATGTACGACCGTCCTCCAGCTGCTTGCCCGCAAAGATCAGTCGCTGCTGATCTGGTGGA 11948 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || || |||||||| ||||| |||||||| ||| | |||||||| || ||||| || ||| Sbjct 11949 ATGCCTTCCTTGTCCTGGATTTTTGCTTTGACGTTTTCGATAGTATCAGAAGCCTCCACT 12008 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATT 283100 ||||| || || || ||||||||||||||||| || || || |||||| Sbjct 12009 TCGAGTGTTATGGTTTTACCCGTCAAAGTCTTTACAAAAATTTGCATT 12056 Score = 100 bits (110), Expect = 6e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019 || || |||||||| || || ||||| ||||| ||||||||||| ||||| || || Sbjct 12896 CCCGCGAAGATCAATCGCTGCTGGTCTGGTGGAATTCCCTCCTTGTCCTGGATTTTCGCC 12955 Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079 || || | ||||| ||||| || ||||| ||||| | ||||| || ||||| || | | Sbjct 12956 TTAACATTCTCGATGGTGTCAGATGCTTCCACTTCCAATGTGATTGTTTTACCAGTAAGA 13015 Query 283080 GTCTTAACGAATATCTGCAT 283099 || ||||| || || ||||| Sbjct 13016 GTTTTAACAAAGATTTGCAT 13035 Score = 100 bits (110), Expect = 6e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019 || ||||| || | || || ||||| ||| ||||||||||||||||| || |||||| Sbjct 13216 CCTGCAAAAATAAGGCGCTGCTGGTCTGGCGGGATACCCTCCTTGTCTTGTATTTTTGCT 13275 Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079 || || | || || ||||| ||||| || || || |||||||||||||| || || | Sbjct 13276 TTAACATTTTCAATTGTGTCTGAAGCCTCCACCTCAAGAGTGATCGTCTTTCCAGTTAGC 13335 Query 283080 GTCTTAACGAATATCTGCATTTT 283102 || || || || || ||||| || Sbjct 13336 GTTTTCACAAAGATTTGCATGTT 13358 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046670735078670