Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Wuchereria_20bancrofti_20[genbank_20GCA_5F001555675.1_202016-02-09] 5,105 sequences; 90,325,107 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq2307 313 3e-80 seq1691 313 3e-80 seq869 280 2e-70 seq20 279 5e-70 seq556 219 4e-52 seq653 131 2e-25 seq34 114 1e-20 seq157 111 2e-19 seq1271 105 7e-18 >seq2307 Length=4436 Score = 313 bits (346), Expect = 3e-80 Identities = 238/276 (86%), Gaps = 5/276 (2%) Strand=Plus/Plus Query 8344 TCTCACTCTGTTGCCCAGGCTGGAGTGCAGT-GGCCTG-ATCTCCGCTCACTGCAACCTC 8401 |||| |||||| ||||||||||||| ||||| |||| | ||||| ||||||||||| ||| Sbjct 1999 TCTCGCTCTGTCGCCCAGGCTGGAGCGCAGTTGGCCGGGATCTCGGCTCACTGCAAGCTC 2058 Query 8402 CGCCTCCCGGGTTCAAGCTATTCTCCTGCCTCAGCCTCCAGAGTAGCTGGGATTACAGGC 8461 ||||||||||||||| || |||||||||||||||||||| ||||||||||| ||||||| Sbjct 2059 CGCCTCCCGGGTTCACGCCATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGACTACAGGC 2118 Query 8462 AAAAGCCACCACGCCAAGCTAA-TTTTTGTATTTTTAGTAGAGAGAGGGTTTCACCATGT 8520 ||||| ||||| ||||| ||||||||||||||||||||| |||||||||| | | Sbjct 2119 GCCCGCCACTACGCCCGGCTAATTTTTTGTATTTTTAGTAGAGACGGGGTTTCACCGTTT 2178 Query 8521 TGGCCAGGCTGGTCTCGAACTCCTGACCTCATGTGATCCACCTGCCTCGGCCTCCCAAAG 8580 | ||| || ||||||||| ||||||| ||| ||||||| || ||||||||||||||||| Sbjct 2179 TAGCCGGGATGGTCTCGATCTCCTGAACTC--GTGATCCGCCCGCCTCGGCCTCCCAAAG 2236 Query 8581 TGCTGGGATTACAGGCATGAGCCACCGCGCCTGGCC 8616 ||||||||||||||| ||| |||||||||| |||| Sbjct 2237 CGCTGGGATTACAGGCGTGAACCACCGCGCCCGGCC 2272 >seq1691 Length=3022 Score = 313 bits (346), Expect = 3e-80 Identities = 237/276 (86%), Gaps = 5/276 (2%) Strand=Plus/Plus Query 8344 TCTCACTCTGTTGCCCAGGCTGGAGTGCAGTGGCCTG--ATCTCCGCTCACTGCAACCTC 8401 |||| |||||| |||||||||||||||||||||| | ||||| ||||||||||| ||| Sbjct 565 TCTCGCTCTGTCGCCCAGGCTGGAGTGCAGTGGCGCGGGATCTCGGCTCACTGCAAGCTC 624 Query 8402 CGCCTCCCGGGTTCAAGCTATTCTCCTGCCTCAGCCTCCAGAGTAGCTGGGATTACAGGC 8461 ||||||||||||||| | |||||||||||||||||||| ||||||||||| ||||||| Sbjct 625 CGCCTCCCGGGTTCACGTCATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGACTACAGGC 684 Query 8462 AAAAGCCACCACGCCAAGCTAA-TTTTTGTATTTTTAGTAGAGAGAGGGTTTCACCATGT 8520 ||||| ||||| ||||| ||||||||||||||||||||| |||||||||| | | Sbjct 685 GCCCGCCACTACGCCCGGCTAATTTTTTGTATTTTTAGTAGAGACGGGGTTTCACCGTTT 744 Query 8521 TGGCCAGGCTGGTCTCGAACTCCTGACCTCATGTGATCCACCTGCCTCGGCCTCCCAAAG 8580 | ||| || ||||||||| ||||||| ||| ||||||| || ||||||||||||||||| Sbjct 745 TAGCCGGGATGGTCTCGATCTCCTGAACTC--GTGATCCGCCCGCCTCGGCCTCCCAAAG 802 Query 8581 TGCTGGGATTACAGGCATGAGCCACCGCGCCTGGCC 8616 ||||||||||||||| ||| |||||||||| |||| Sbjct 803 CGCTGGGATTACAGGCGTGAACCACCGCGCCCGGCC 838 >seq869 Length=2026 Score = 280 bits (310), Expect = 2e-70 Identities = 227/272 (83%), Gaps = 2/272 (1%) Strand=Plus/Minus Query 8346 TCACTCT-GTTGCCCAGGCTGGAGTGCAGTGGCCTGATCTCCGCTCACTGCAACCTCCGC 8404 ||||||| | |||||| |||||||||||||||| ||||| |||||| ||||||||| | Sbjct 667 TCACTCTTGGTGCCCACGCTGGAGTGCAGTGGCACCATCTCGGCTCACCGCAACCTCCAC 608 Query 8405 CTCCCGGGTTCAAGCTATTCTCCTGCCTCAGCCTCCAGAGTAGCTGGGATTACAGGCAAA 8464 |||||| |||||||| |||||||||||||||||||| ||||||||||||||||||| | Sbjct 607 CTCCCGCGTTCAAGCGATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGGAGG 548 Query 8465 AGCCACCACGCCAAGCTAATTTTTGTATTTTTAGTAGAGAGAGGGTTTCACCATGTTGGC 8524 ||||||||| || ||| | ||||||||| |||||||||| | |||| |||||| || Sbjct 547 AGCCACCACACCCGGCTGA-TTTTGTATTGTTAGTAGAGACGGCATTTCTCCATGTGGGT 489 Query 8525 CAGGCTGGTCTCGAACTCCTGACCTCATGTGATCCACCTGCCTCGGCCTCCCAAAGTGCT 8584 ||||||||||||||||| |||| || |||| || ||| ||||||||||||||||| Sbjct 488 CAGGCTGGTCTCGAACTGGCGACCCCAGTGGATCTGCCCGCCCCGGCCTCCCAAAGTGCT 429 Query 8585 GGGATTACAGGCATGAGCCACCGCGCCTGGCC 8616 ||| | |||||| ||||||| || | |||||| Sbjct 428 GGGGTGACAGGCGTGAGCCATCGTGACTGGCC 397 Score = 214 bits (236), Expect = 2e-50 Identities = 202/253 (80%), Gaps = 20/253 (8%) Strand=Plus/Minus Query 8380 GATCTCCGCTCACTGCAACCTCCGCCTCCCGGGTTCAAGCTATTCTCCTGCCTCA----- 8434 |||||| ||||||||||||||||||||||| ||||||||| |||||||||||||| Sbjct 255 GATCTCGGCTCACTGCAACCTCCGCCTCCCAGGTTCAAGCGATTCTCCTGCCTCAGCTCG 196 Query 8435 GCCTCCAGAGTAGCTGGGATTACAGGCA--AAAGC----CACCACGCCAAGCTAAT-TTT 8487 |||||| |||||||||||||||||| || | ||| ||| |||| |||||| || Sbjct 195 GCCTCCCGAGTAGCTGGGATTACAGACAGTACAGCACAGCACAGCGCCCGGCTAATGTTG 136 Query 8488 TGTATTTTTAGTAGAGAGAGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTGAC 8547 |||||| | |||||||| |||||||||||| ||||| | |||||| || | ||| Sbjct 135 TGTATTGTGAGTAGAGACGGGGTTTCACCATACTGGCCCTGTTGGTCT-GACCGCCT--- 80 Query 8548 CTCATGTGATCCACCTGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACCG 8607 || ||||||||| |||| |||||||||||||| ||||| |||||| |||||||||| Sbjct 79 CT----TGATCCACCGGCCTTGGCCTCCCAAAGTGAGGGGATGACAGGCTTGAGCCACCG 24 Query 8608 CGCCTGGCCCTTT 8620 ||| ||||| || Sbjct 23 CGCAGGGCCCATT 11 >seq20 Length=932 Score = 279 bits (308), Expect = 5e-70 Identities = 216/256 (84%), Gaps = 1/256 (0%) Strand=Plus/Plus Query 8349 CTCTGTTGCCCAGGCTGGAGTGCAGTGGCCTGATCTCCGCTCACTGCAACCTCCGCCTCC 8408 |||||||||||||||| |||| |||||| |||| ||||||||||||||| |||||| Sbjct 68 CTCTGTTGCCCAGGCTAGAGT-CAGTGGTGCATTCTCAGCTCACTGCAACCTCTGCCTCC 126 Query 8409 CGGGTTCAAGCTATTCTCCTGCCTCAGCCTCCAGAGTAGCTGGGATTACAGGCAAAAGCC 8468 | |||||||| ||||| ||||||||||||| |||||||||||||| |||| |||| Sbjct 127 CAGGTTCAAGTGATTCTTGTGCCTCAGCCTCCCAAGTAGCTGGGATTATGGGCATGAGCC 186 Query 8469 ACCACGCCAAGCTAATTTTTGTATTTTTAGTAGAGAGAGGGTTTCACCATGTTGGCCAGG 8528 |||| | | |||||||||||||| |||| ||||||| ||||||||| |||||||||||| Sbjct 187 ACCATGTCCAGCTAATTTTTGTACTTTTTGTAGAGATGGGGTTTCACTATGTTGGCCAGG 246 Query 8529 CTGGTCTCGAACTCCTGACCTCATGTGATCCACCTGCCTCGGCCTCCCAAAGTGCTGGGA 8588 |||||||| |||| ||| ||||| |||||| | ||| |||||||||||| ||||||| Sbjct 247 CTGGTCTCAAACTTCTGGCCTCAAGTGATCTGCTCACCTTGGCCTCCCAAAGGGCTGGGA 306 Query 8589 TTACAGGCATGAGCCA 8604 |||||||| ||||||| Sbjct 307 TTACAGGCGTGAGCCA 322 >seq556 Length=1792 Score = 219 bits (242), Expect = 4e-52 Identities = 151/170 (89%), Gaps = 3/170 (2%) Strand=Plus/Plus Query 8450 GGGATTACAGGCAAAAGCCACCACGCCAAGCTAATTTTTGTATTTTTAGTAGAGAGAGGG 8509 |||||||||||| |||||||||||| |||||||||||||||||||||||||| || | Sbjct 1617 GGGATTACAGGCGTGAGCCACCACGCCCTGCTAATTTTTGTATTTTTAGTAGAGACAGAG 1676 Query 8510 TTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCATGTGATCCACCTGCCTCG 8569 ||| |||||||||||| ||||||||| |||||||||||||| |||||| |||||||| Sbjct 1677 TTTTGCCATGTTGGCCAAGCTGGTCTCAAACTCCTGACCTCAGGTGATCTGCCTGCCTCA 1736 Query 8570 GCCTCCCAAAGTGCTGGGATTACAGGCATGAG---CCACCGCGCCTGGCC 8616 |||||||||||||||||||||||||||||||| ||||| ||||||||| Sbjct 1737 GCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACCACCCCGCCTGGCC 1786 >seq653 Length=1862 Score = 131 bits (144), Expect = 2e-25 Identities = 104/124 (84%), Gaps = 1/124 (1%) Strand=Plus/Plus Query 8349 CTCTGTTGCCCAGGCTGGAGTGCAGTGGCCTGATCTCCGCTCACTGCAACCTCCGCCTCC 8408 |||||||||||||||| |||| |||||| |||| ||||||||||||||| |||||| Sbjct 59 CTCTGTTGCCCAGGCTAGAGT-CAGTGGTGCATTCTCAGCTCACTGCAACCTCTGCCTCC 117 Query 8409 CGGGTTCAAGCTATTCTCCTGCCTCAGCCTCCAGAGTAGCTGGGATTACAGGCAAAAGCC 8468 | |||||||| ||||| ||||||||||||| |||||||||||||| |||| |||| Sbjct 118 CAGGTTCAAGTGATTCTTGTGCCTCAGCCTCCCAAGTAGCTGGGATTATGGGCATGAGCC 177 Query 8469 ACCA 8472 |||| Sbjct 178 ACCA 181 >seq34 Length=1319 Score = 114 bits (126), Expect = 1e-20 Identities = 78/88 (89%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 8349 CTCTGTTGCCCAGGCTGGAGTGCAGTGGCCTGATCTCCGCTCACTGCAACCTCCGCCTCC 8408 |||||| ||||||||||||||||||||| ||||||| |||||||| |||||| |||||| Sbjct 938 CTCTGTCCCCCAGGCTGGAGTGCAGTGGCGTGATCTCAGCTCACTGGAACCTCTGCCTCC 879 Query 8409 CGGGTTCAAGCTATTCTCCTGCCTCAGC 8436 ||||||||| ||||||||| |||||| Sbjct 878 TGGGTTCAAGTGATTCTCCTGTCTCAGC 851 >seq157 Length=1494 Score = 111 bits (122), Expect = 2e-19 Identities = 90/108 (83%), Gaps = 5/108 (5%) Strand=Plus/Plus Query 8344 TCTCACTCTGTTGCCCAGGCTGGAGTGCAGTGGCCTGATCTCCGCTCACTGCAACCTCCG 8403 ||||||||||| || ||||||||||||||||| |||||| |||||||| | | | Sbjct 1392 TCTCACTCTGTCACC-AGGCTGGAGTGCAGTGGTGTGATCTTGGCTCACTGAANC----G 1446 Query 8404 CCTCCCGGGTTCAAGCTATTCTCCTGCCTCAGCCTCCAGAGTAGCTGG 8451 |||||| |||||||| |||||||||||||||||||| ||||||||| Sbjct 1447 CCTCCCTGGTTCAAGGGATTCTCCTGCCTCAGCCTCCCAAGTAGCTGG 1494 >seq1271 Length=2450 Score = 105 bits (116), Expect = 7e-18 Identities = 70/77 (91%), Gaps = 2/77 (3%) Strand=Plus/Minus Query 8540 CTCCTGACCTCATGTGATCCACCTGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCATG 8599 ||||||||||| |||||| || ||||||||||||||||||||||||||||||||| || Sbjct 2450 CTCCTGACCTC--GTGATCTGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTG 2393 Query 8600 AGCCACCGCGCCTGGCC 8616 ||||||||| ||||||| Sbjct 2392 AGCCACCGCCCCTGGCC 2376 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521454722547000