Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Wuchereria_20bancrofti_20[genbank_20GCA_5F001555675.1_202016-02-09] 5,105 sequences; 90,325,107 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq4574 104 6e-17 seq4130 104 6e-17 seq4330 89.7 1e-12 seq4209 86.0 2e-11 seq3175 86.0 2e-11 >seq4574 Length=39733 Score = 104 bits (114), Expect = 6e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || |||||||| || || ||||| ||||| | || |||||| || || Sbjct 22020 CAAATCTTTGTTAAAACTCTTACCGGTAAAACAATCACATTGGAAGTGGAAGCATCTGAT 21961 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||| || || ||| || |||||||| || ||||| || || |||||||| Sbjct 21960 ACCATCGAGAATGTTAAGGCAAAAATCCAGGACAAGGAGGGAATTCCGCCAGACCAGCAG 21901 Query 178044 CGACTTATCTTCGCCGG 178060 ||| | |||||||| || Sbjct 21900 CGATTGATCTTCGCGGG 21884 Score = 104 bits (114), Expect = 6e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||||||||| || || |||||||| ||||| || || ||||| |||||| Sbjct 22344 CAAATCTTCGTGAAAACACTGACTGGAAAAACAATCACTCTTGAAGTGGAGGCTTCAGAC 22285 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || ||| ||| || || ||||| || || ||||| || |||||||| Sbjct 22284 ACAATTGAAAATGTTAAAGCAAAAATACAAGACAAGGAGGGTATCCCGCCAGACCAGCAG 22225 Query 178044 CGACTTATCTTCGCCGG 178060 || ||||| || || || Sbjct 22224 CGCCTTATTTTTGCAGG 22208 Score = 86.0 bits (94), Expect = 2e-11 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| || ||||| | || || || ||||||||| | || || || || || Sbjct 21674 CAAATTTTTGTAAAAACATTGACGGGCAAGACGATCACCTTAGAAGTTGAGGCTTCTGAT 21615 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || || || ||||||||||| |||||||| || |||||||| ||||| Sbjct 21614 ACAATCGAAAATGTGAAGGCCAAGATTCAGGATAAAGAAGGGATTCCTCCGGATCAGCAG 21555 Query 178044 CGACTTATCTTCGCCGGAAA 178063 || || || || || || || Sbjct 21554 CGCCTCATTTTTGCTGGTAA 21535 >seq4130 Length=21019 Score = 104 bits (114), Expect = 6e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || |||||||| || || ||||| ||||| | || |||||| || ||| Sbjct 13032 CAAATCTTTGTTAAAACTCTTACTGGTAAAACAATCACATTGGAAGTGGAAGCATCTGAC 12973 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||| || || || || |||||||| || ||||| || || |||||||| Sbjct 12972 ACCATCGAGAATGTTAAGGCGAAAATCCAGGACAAGGAGGGAATTCCACCAGACCAGCAG 12913 Query 178044 CGACTTATCTTCGCCGG 178060 ||| | |||||||| || Sbjct 12912 CGATTGATCTTCGCGGG 12896 Score = 100 bits (110), Expect = 7e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| || ||||| | || || || ||||||||| | || || || || ||| Sbjct 12687 CAAATTTTTGTAAAAACATTGACGGGCAAGACGATCACCTTAGAAGTTGAGGCTTCTGAC 12628 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || || || ||||||||||| |||||||| ||||||||||| ||||| Sbjct 12627 ACAATCGAAAATGTAAAGGCCAAGATTCAGGATAAAGAAGGGATCCCTCCGGATCAGCAG 12568 Query 178044 CGACTTATCTTCGCCGGAAA 178063 || ||||| || || || || Sbjct 12567 CGCCTTATTTTTGCTGGTAA 12548 >seq4330 Length=27005 Score = 89.7 bits (98), Expect = 1e-12 Identities = 104/138 (75%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || |||||||| | || ||||| ||||| ||||| ||||| ||| || || Sbjct 21138 CAGATATTTGTGAAAACGTTAACTGGAAAGACGATTACCCTTGAGGTAGAATCGTCCGAT 21197 Query 177984 ACCATCGAGAACGTCAA-ACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCA 178042 || || ||||| || || || ||| |||||||| || || || || || || || ||||| Sbjct 21198 ACTATTGAGAATGTGAAGACTAAA-ATTCAGGATAAGGAGGGTATTCCACCTGATCAGCA 21256 Query 178043 ACGACTTATCTTCGCCGG 178060 ||||||||| || || || Sbjct 21257 ACGACTTATTTTTGCAGG 21274 >seq4209 Length=23298 Score = 86.0 bits (94), Expect = 2e-11 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| || || ||| | || || |||||||| || || ||||| ||| ||| || Sbjct 2666 CAAATTTTTGTCAAGACTTTAACTGGTAAAACGATTACGCTTGAGGTCGAATCCTCGGAT 2607 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || ||||| || ||| || || |||||||||||||| || || || || ||||| Sbjct 2606 ACAATTGAGAATGTAAAAGCGAAAATACAGGACAAAGAAGGCATACCCCCAGATCAGCAG 2547 Query 178044 CG 178045 || Sbjct 2546 CG 2545 >seq3175 Length=8402 Score = 86.0 bits (94), Expect = 2e-11 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| || || ||| | || || |||||||| || || ||||| ||| ||| || Sbjct 5116 CAAATTTTTGTCAAGACTTTAACTGGTAAAACGATTACGCTTGAGGTCGAATCCTCGGAT 5175 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || ||||| || ||| || || |||||||||||||| || || || || ||||| Sbjct 5176 ACAATTGAGAATGTAAAAGCGAAAATACAGGACAAAGAAGGCATACCCCCAGATCAGCAG 5235 Query 178044 CG 178045 || Sbjct 5236 CG 5237 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203652466575370