Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonorchis_20sinensis_20[genbank_20GCA_5F000236345.1_202011-11-28] 4,348 sequences; 547,288,241 total letters Query= NC_000935.1 Length=36524 Score E Sequences producing significant alignments: (Bits) Value seq1097 159 8e-35 >seq1097 Length=3195 Score = 159 bits (176), Expect = 8e-35 Identities = 192/259 (74%), Gaps = 3/259 (1%) Strand=Plus/Plus Query 24453 AGCCTTCTCTTCAATCCATCTCAAGCAGGCTTCGTCAAATGTGACATTAGGAAAATCATC 24512 ||| || || |||| |||||| | |||||| || ||||| ||||||| ||| ||||| | Sbjct 8 AGCTTTTTCCTCAAGCCATCTTAGGCAGGCCTCTTCAAAAGTGACATCAGGTAAATCCCC 67 Query 24513 TAACTTTGCTATTCTCCATAATTCAGCTCTTCGTTTGTCGTGTAACTCCTGAGCTTGTTT 24572 || |||| ||| || ||| | ||| ||| |||| |||||||| |||||||||||||| Sbjct 68 TAGCTTTTCTACTCGCCAGAGTTCTGCTTTTCGCTTGTCGTGCAACTCCTGAGCTTGCCG 127 Query 24573 TTTGTCCTCTGTGCCAAGTGATTCCTTAATTCTTTTTCCGCACGGTGTTGTGTAACTGCC 24632 |||||||| ||||||||| ||||||||||||| ||| |||| ||| | || | | Sbjct 128 TTTGTCCTTTGTGCCAAGAGATTCCTTAATTCGTTTCCCGCCCGGGAGCGAATACGAGGC 187 Query 24633 GTACCAAATTTTACCACGTTTGAAGATTGACATTT--TTTACTC-CTGATGACATCAATC 24689 ||||| |||| | | ||||| |||||||| ||| ||| | ||| ||||| | Sbjct 188 ATACCATATTTCATTTCTGCGGAAGAGTGACATTTTCTTTCCTCTGTTATGCCATCACCC 247 Query 24690 TCGCTCTCAGAGAGAGTAT 24708 ||||| | || ||||| Sbjct 248 GCGCTCACCTGGACAGTAT 266 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 116749171637136